Etheostoma cragini (Arkansas darter): 117937354
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Entry
117937354 CDS
T07493
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A isoform X1
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecra04040
]
117937354 (scn4aa)
Ion channels [BR:
ecra04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117937354 (scn4aa)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
117937354
NCBI-ProteinID:
XP_034717136
LinkDB
All DBs
Position
21:complement(3332217..3358482)
Genome browser
AA seq
1906 aa
AA seq
DB search
MAPLLPRRGTDAFRRFTKESLAEIERLKDERKKAAEVKGHIVLEGQKEEEPPAPNADLEA
GKSLPMIYGDPPSELLNTPLEDLDPFYEDQPTFIVITKGNTIYRFNAEPACYILSPFSLV
RRGAIKILIHSLFSLFIMMTILSNCVFMTLSNPPAWSKTVEYVFTGIYTTEATIKVLSRG
FCVGSFTFLRDPWNWLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIV
AALIQSVKKMVDVMILTVFALAVFALVGLQLFMGNLRQKCVRWPIPTNETAFEFFNSTAT
FNNTMSFNNTMGVNDTTYSNGTFNFNEYIESSENHYFLEGSLDALLCGNSSDAGKCPEGY
TCMKAGRNPNFGYTSFDSFGWAFLALFRLMTQDYWENLFQLILRAAGKTYMLFFVVIIFL
GSFYLINLILAVVAMAYEEQNQATQREAIEKEEEFQRLLEEYKNQDEQAKRLGSQFTLTS
KKSLSHHTIVGMTDDEQSLGHDEIIKDCNGRIIPRLLIRAPTMVESAADYELREKSLGSV
HSRLHLEEPGLTKRTGSALSVLTAAAIEELQEAQRPCPPCWYKFADLFLKWDCCPQWVFF
KKWMHFVVMDPFVDLGITICIVLNTLFMAMEHYPMTPEFEHMLSVGNLVFTGIFTAEMFF
KLMAMDPYYYFQVGWNIFDSIIVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLN
MLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKISVDCELPRWHMNDF
FHSFLIVFRILCGEWIETMWDCMEVAGAGMCLVVFMMVMVIGNLVVLNLFLALLLSSFSG
DNLSTGDDDGEMNNLQIAISRITRGIDWFKAFMVQTVLQILGRKPKEPDEGLTDDEDPKT
EAIEMNHLDTSQNFRMADGIPNCLVEGRPSGVIVDGELILNVPIAQVESDFENLDDDDDE
NDADCADDSEISDEINSQHYLENLEDQSSLLGKGKLMGALNDGDSSVCSTVDYQPPEPEP
EEVEEEEPDPVEPEACFTDNCVKRWPCLTVDITQGKGKKWWNLRRTCFTIVEHDWFETFI
VFMILLSSGALAFEDIYIERRRTIKIILEFADKVFTYIFIIEMLLKWVAYGFKTYFTNAW
CWLDFFIVDISLISLAANWMGYAELGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAI
PSIFNVLLVCLIFWLIFSIMGVNLFAGKFYRCINTTTEELFPITEVNNRSDCMAVKEATK
EARWVNVKVNYDNVGLGYLSLLQVSTFKGWMDIMYAAVDSREVEEQPSYEINLYMYIYFV
IFIIFGSFFTLNLFIGVIIDNFNQQKKKFGDKDLFMTEEQKKYYEAMKKLGSKKPQKPIP
RPTNLIQGLVFDFISQQFFDIFIMVLICLNMVTMMVETDNQSAEKEDFLFKVNVAFIVVF
TGECVLKLFALRQYYFTNGWNVFDFVVVILSIAGTMLSDIIEKYFVSPTLFRVIRLARIG
RILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKKQAGIDDV
FNFETFGGSIICLFEITTSAGWDGLLLPMLSNEFPDCDPDFENPGTDVKGNCGNPVMSMT
FFCSYIIVTFLVVVNMYIAIILENFNVAQEESGDALCEEDFEMFNETWEKFDLDGSQFIE
YSRLSDFCDTLQPPLRVAKPNRLRLIEMDLPLVIGDRIHCLDVLMAVTQMVLGDTVEMAA
MRLSIEAKFILSNPTSDSFAPITTTVRHKEEQMAVVVIQRAYRNHLLKRCVRHAAFMHRC
KRVGRKDEGKDPPEKEGMLARRMGVLYGSNVDLAEEMEQADLETLASRQPPDPETLSLYT
EAQCGLEPPEPNIIVVPVEITNEVLLHSAPNPHLSILHANLRETMV
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccctgctccctcgccgaggcaccgatgcgttccgccgcttcaccaaggagtcg
ctggcggagatcgagaggctcaaggatgaaagaaaaaaggctgcagaagtaaagggccac
atcgtgctagagggccaaaaggaagaggagccaccggccccaaacgctgatctggaggcg
ggcaagagtctgcccatgatctacggagaccctccatcagagctgctcaacacacctctg
gaggacctggaccccttctatgaagaccagcccacattcattgtgatcactaaaggaaac
acaatctacaggttcaacgctgaaccggcttgctacattctgagcccctttagtttggtt
agaagaggagccatcaaaattctcatacattcattatttagcctgttcatcatgatgacc
attctatcgaattgtgtattcatgacgctgagcaacccaccagcatggagtaaaactgtt
gagtatgtttttactggtatctataccactgaggcaacaatcaaagtgttgtcaagaggt
ttctgtgttgggtcttttacattccttcgagatccatggaattggctggatttcatggtg
atcagcatggcatacgtcacagagtttgttgaccttggcaacgtgtcagctctcaggacc
tttcgtgtacttcgagcccttaaaacaattactgtgattcctggtttgaaaaccatcgtg
gccgccttgatccagtcggtgaagaaaatggttgacgtcatgatcctgaccgtctttgcc
ctcgctgtgttcgccctcgttggccttcaactctttatgggaaatctgcgtcagaagtgt
gtgcgatggcccatcccaacaaatgaaacggcatttgaattttttaactccaccgccacg
tttaacaacaccatgtctttcaacaacaccatgggcgtcaatgatacaacatattccaat
ggcaccttcaatttcaatgagtatattgagagctcggagaatcactattttttggaaggc
agtctagatgctctactatgtggaaacagctctgatgctggaaagtgcccagaaggatac
acgtgcatgaaggctgggaggaaccccaactttggctacaccagttttgactcgtttggc
tgggccttcctcgcccttttcagactcatgacgcaggactactgggagaaccttttccag
ctgatccttcgggcggctggtaagacatacatgctgttctttgtggtgattatctttctg
ggctccttctacctcatcaacctcatcctggctgtggtagccatggcttatgaagaacag
aatcaggcaactcagcgagaggccatcgagaaagaggaagagttccagcgactactagag
gaatacaagaatcaggatgagcaggcaaaacgtcttgggagccaattcactctaaccagt
aagaagtcgctcagtcatcacaccatagttggtatgacagatgatgaacaaagccttggg
catgatgaaattatcaaggattgtaacgggagaatcattccccgtctgttaatccgagcg
cccaccatggtcgagtctgctgcagattacgaactccgagagaagtcgttaggctctgtg
cacagcaggcttcatctggaagaaccaggcctgacaaagaggactggtagtgctctgtct
gtgctcactgcagctgctatagaagagttgcaggaggctcagaggccgtgcccaccctgc
tggtacaagtttgcagacttattcctgaagtgggactgctgcccgcaatgggtattcttt
aaaaagtggatgcactttgtggtgatggacccttttgtcgacttgggcatcaccatctgc
attgtgctcaacactctcttcatggctatggagcactaccccatgaccccagagtttgaa
catatgctctcagtggggaatctggttttcaccgggatcttcacagcagagatgttcttc
aagctgatggccatggatccctactactacttccaagttggctggaacattttcgacagc
atcatcgtcactctcagtctggtagagttggggctggcaaatgtccagggcttgtctgtc
ctcaggtccttccgtctgcttcgtgtcttcaaacttgcaaagtcctggcccacgctcaac
atgctgatcaaaattattggtaactcagtaggagctttaggaaacctgactttggtgctg
gccatcatcgtcttcatctttgccgtggtgggtatgcagctctttggcaagagctacaag
gaatgcgtgtgcaagatctccgtagactgcgagctgccgcgctggcacatgaacgacttc
ttccactcgttcctaatcgtgttccgcatcttatgcggggagtggatcgagaccatgtgg
gactgcatggaggtggcaggagctgggatgtgtttagttgtcttcatgatggtcatggtc
atcggaaatctagtggtgttgaacctcttcctggccttgctgctcagctcgttcagcgga
gacaacctctccacgggggacgacgacggagagatgaacaatctccagattgccattagc
aggatcacacgaggcatcgactggttcaaagcattcatggttcaaactgtcctgcagatt
ctgggcagaaagcccaaagagccggatgagggtctgacggacgacgaggaccctaaaacc
gaggcaattgaaatgaaccacttggacaccagtcagaattttagaatggcagatgggata
cctaattgtttggttgaaggccggccttctggagtaattgtggatggagagcttattctc
aatgtgccaatcgctcaggtagagtccgactttgaaaacctggatgatgatgatgatgaa
aatgatgctgattgtgctgatgactcagagatttcagatgagataaatagccaacattac
ttggaaaacttagaagaccaaagtagcttgctgggaaaaggcaaattgatgggggctttg
aatgatggggattcttcagtgtgtagcacagtggactatcaaccacctgagcctgaacca
gaagaagtggaagaagaagagccagaccctgtggagccagaggcctgcttcactgacaac
tgtgtgaagcgctggccgtgtctaactgtggacatcacccaaggtaaaggcaagaaatgg
tggaacctccgtaggacttgcttcactattgtggagcatgactggtttgaaaccttcata
gtctttatgatcctcctcagcagcggagctctggcctttgaagacatatacatagaaagg
cgccgaaccatcaaaataattctggagtttgcagacaaagttttcacctacatctttatc
atcgagatgctccttaaatgggttgcatacggcttcaagacctacttcaccaacgcttgg
tgttggttagactttttcattgtagatatttccctgataagtttagctgccaactggatg
ggatacgctgagcttggaccaatcaaatcactcaggactctcagggcactaagacctctt
cgagcgctgtcaagatttgaagggatgagggtggtggtgaatgctctcgttggagcgatt
ccttccatcttcaacgtgttgctggtttgtctgattttctggctcatcttcagcatcatg
ggagttaacctgtttgcggggaagttctaccgctgcatcaacaccaccacagaggagctg
tttcccattacagaggtcaacaaccggagcgactgcatggctgtcaaagaggcaacgaag
gaagcccgctgggtcaacgtcaaagtcaactatgacaatgttggactaggctatctgtca
ctgcttcaagtgtcaacttttaaaggctggatggacatcatgtatgctgccgttgactca
agagaggtagaggagcaaccttcttatgagatcaacctctacatgtacatttactttgta
atcttcatcatctttggttctttcttcacactcaacctcttcattggtgtcattattgac
aatttcaaccaacaaaagaagaagtttggagataaagacctcttcatgactgaggaacaa
aaaaagtactatgaagccatgaagaaacttggctcaaagaagccacagaagccgattcca
cgtccaacgaacttaatccagggattggtgtttgacttcatcagtcagcagttctttgac
atcttcatcatggtgctcatctgcctcaacatggtgaccatgatggtagagacggacaac
cagagcgcagagaaggaagatttcctctttaaagtaaacgtggctttcatcgtcgtcttc
accggagagtgtgtgttgaagctctttgccctgcgacaatactacttcaccaacggatgg
aacgtttttgattttgttgtggtcatcttgtccatagctggtacaatgctctcagacata
atcgagaagtactttgtgtcacccactctgttcagagtgatcagactggccagaataggc
aggattctgagacttatcaaaggagcaaagggcattcggacgcttctcttcgctttaatg
atgtcccttcctgccctgttcaatattggtctcctgctcttccttgttatgttcatcttc
tccatatttggcatgtcaaactttgcctatgtcaagaagcaggctggaatcgatgatgta
tttaactttgagacgtttgggggaagcattatctgcttgtttgagatcacaacatcagcc
ggctgggatggacttttacttccaatgcttagcaacgagtttccagactgtgatccagac
ttcgagaacccaggcacagatgtaaagggtaactgtggcaatccggtcatgagcatgaca
ttcttctgcagctacatcatcgtcacatttttagtggtggtcaacatgtatatcgccatc
atcttggagaacttcaatgtggcgcaggaggagagcggtgatgcactctgcgaggaggac
tttgagatgttcaatgagacttgggagaagtttgacttagatggatctcagttcattgag
tattcccggctctcagatttctgtgataccttgcagccgccgctgagggttgccaagccc
aatcggcttcgcctgattgaaatggatctgcccctggtcattggggacaggattcactgc
ctggatgtcttgatggccgtcacacagatggtcttgggagacacggtggagatggcggca
atgcggctgagcatcgaggccaagtttatcctgagcaaccccacctcagactcctttgca
ccaattacgacaacggtgcgccacaaagaagagcagatggccgttgtagtcattcagagg
gcctaccgcaaccacctgctgaaacgctgcgtacgccacgcagcatttatgcaccgctgt
aagagggtgggtagaaaggacgaaggtaaagacccaccagagaaagagggtatgctcgca
cgaaggatgggagtgctctatgggagcaacgtggaccttgcagaggagatggagcaggct
gatttagaaactctagcaagccgacagcctcctgatcccgagacattgtcactttacaca
gaggcccagtgcggtctagaaccccctgagccaaatatcattgttgtacctgtagaaatt
actaatgaggttttattacattctgcccccaacccacacctctctatcctacatgcaaat
ctgagagagacgatggtataa
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