Etheostoma cragini (Arkansas darter): 117940235
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Entry
117940235 CDS
T07493
Symbol
tiam1b
Name
(RefSeq) T-lymphoma invasion and metastasis-inducing protein 1 isoform X1
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04530
Tight junction
ecra04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
117940235 (tiam1b)
09142 Cell motility
04810 Regulation of actin cytoskeleton
117940235 (tiam1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ecra04990
]
117940235 (tiam1b)
Domain-containing proteins not elsewhere classified [BR:
ecra04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
117940235 (tiam1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_Tiam1
RhoGEF
Tiam_CC_Ex
PH
RBD
PH_9
PDZ
SOS1_NGEF_PH
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
117940235
NCBI-ProteinID:
XP_034721475
LinkDB
All DBs
Position
3:222190..275539
Genome browser
AA seq
1585 aa
AA seq
DB search
MGNVESQNGDQALYGNEHGYLSRKHMSRSLRISNKQSRRSRHASSGKIEHRNSETSTRSS
STPSIPQSLADHGLEPFNETNILPDFGSPIWVDRVAMNLRPVSFHNDLANRSMHMNTMHV
TLPSPTAEEVQEEDVYTGEVTYLQKTQDGSKETVNFKKKRSKSADMWRNDSLEFSLSDLS
QEHLTSTEEIIDTGNERDFTDCKGHLQSSPSDSVDRANSLDELYSQKIPAHRKPHGRYAK
WHVTNRAIGEHEDDKMLSPSEEDGNSYGAYTLPCRRSHCLSEGLSSHKAAMCASMQGRRA
QTIQDVTAGEGSEYEDSGIDGVTVEADHQSRRYKTMSASFSVCSAAGRSMFAGSDSGSSS
GGGASECVQGVYENFRQELEMSSCQTESLEEAGSALSDEQSTMSSAYQSDPLLSVAQGMV
RKAGRLAVKNFLVHKKIKKVESASRRKWKSYWVSLKGCTLFFYETDGRSGIDNNSIPKHA
IWVENSIVQAVPEHPKKDFVFCLSNSLGYAFLFQTCSQTELENWITAIHSACAAAVARQH
HREDTVRLLRAEIKKLEQKIDMDEKMKKMGDMQLSAVTDTKKRKTILDQIFLWEQNLEQF
HMDLFRFRCYLASLQGGELPNPKRLLAVASRPTKLAMGRLGIFSVSSFHALVAARTENGV
RRRTQAMSRSCSKRKSRFSSLWGLDTTSKKKTKAYPSINQQVFADGGEPVKKPVDGIHVD
LAKEHTKSEEGCVKSLPQPSTESDIWVPDHLTPSWVCLPNDQPVLTIIQPGESALCVLET
ICKAHQLDPTKHYLRLKFLIENQVQLYIPKPEEDVCDLLYKEIELCSKITKVIQFDRDES
CMIGYGFSISVVEEDGVQQLYITDVKAGGLAFAKGLNAGDEILQLNGKDSHGLNFSDMKA
AFSQASLALTVNTLPSVERRQLCYLPPRCSDAEEDLYTDIFSQSQEEILDDGVGLLLGSS
GDSLDDDSEIFSEFECRKSTEQVAAFCRSLHDMNPTECVSSSPSPDSSFPPRSTLRQLSD
ADKLRKVICELVETERTYVKDLNCLIGRYLTPLQKETFLTQDELDVLFGNLPEMVEFQVE
FLKTLEDGTRLVPDLEKLERVDQFKKILFSLGGSFLYYADRFKIYSAFCASHTKVPKVLV
KAKTDHEFKSFLDDRNPKQQHSSTLESYLIKPIQRVLKYPLLLKELYTLTDPDSEEHYHL
DVAMKAMNKVASHINEMQKIHEEFGAVFDLLITEQSGEKKEVADLSMGDLLLHTSVTWIN
PPASLGKWKKEPQIATFVFKTAVVLVCKDGSKQKKKMVGSHRVSMSSEEKDPFRFRHMIP
TDALQVRSLGNADGEGSAVCEIVHIKSESEGRPERTFQLCCSSPESRKDFLKTVHSILRE
KHRRQLLKTESLPLNQQYVPFGGKRLCALKGARPAINRAASAPTRTLGRRKLVRNRFTID
TDIVFDGEPEQDLASPQEPKSNRQQQDNKADEPPPQSELAGDTDRWVEEQFDLEEYEDPE
EVKETDILSDEDEFCQTPGALAAEADLEARVMALSLETEESLKSPQVSRTPDDVKQSAGI
NEKQREKDEIWVRRQRSGSSPDCGK
NT seq
4758 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatgttgagagccagaatggggaccaagccctctacggtaacgaacatggctat
ttgtcacgtaagcacatgtctcggtctcttcgcatctccaacaagcagtccagacgctct
cgacatgcttcatcagggaaaatagagcacaggaactctgagacgagcacacgctcaagt
agcacccccagtatcccgcaatccctggctgaccatggactggagcctttcaatgagacg
aatatcctcccagacttcggaagccccatttgggtggaccgcgtggccatgaacctgcgg
cctgtgtcctttcacaatgatctcgccaatcggtccatgcacatgaatacgatgcacgta
acccttcctagccccactgcagaggaggtgcaggaagaagatgtgtacacaggcgaggta
acatacctccagaaaactcaggacggctccaaggagaccgtcaacttcaagaagaaaagg
tctaagtctgcagacatgtggcgaaatgacagcctggagttctccctgtcggacctaagc
caggagcacctgaccagcacagaggagatcatagacacgggcaatgagagggacttcact
gactgcaaaggacacctgcagtccagcccttcagactccgttgacagggccaactccctg
gacgagctgtatagccagaagatccccgcccaccggaaaccccacggccgctatgccaag
tggcacgtcactaacagggctatcggggagcacgaagacgataagatgctctccccatca
gaggaggatggtaactcctacggtgcatacaccctcccctgccggcgctcccactgcctg
tccgaaggcctgagcagccataaagctgccatgtgtgccagtatgcagggcaggagggcg
cagactatacaggatgtcacagctggcgagggcagcgagtacgaggacagtggcatcgat
ggggtgacagtggaggccgatcaccagtctcgacgctacaagaccatgtcggcctcattc
tccgtgtgctcggcagccggcaggagcatgtttgccggcagcgacagcggcagcagcagt
ggcggcggggccagcgagtgtgtacagggcgtgtacgagaactttcgccaagaactggaa
atgagctcctgccagacggagagcttggaggaggcggggtcggccctaagtgacgagcag
agcaccatgagctccgcctaccagtcggacccattgctcagtgttgcccaggggatggtg
cgcaaagctggcaggcttgccgtcaagaacttcctcgtacataagaagatcaagaaagtg
gagtcagcctcgaggcgcaagtggaagagttactgggtttccctgaaaggttgcactctt
ttcttctatgagactgatggccgttcagggatcgacaacaacagtattcccaagcatgcc
atctgggtagagaacagtattgtccaggcggtaccagagcatcccaaaaaggactttgtg
ttttgtctcagcaactccctgggatatgcttttctgtttcagacctgcagccagacagag
ctggagaactggatcacagccatccactcggcatgtgccgctgccgttgcccgccagcac
cacagagaggacacggtgcgcctgcttcgcgcagagatcaagaagctggagcagaagatc
gacatggacgagaagatgaagaagatgggagacatgcagctgtctgctgttactgacacc
aagaagaggaagacaatcctggatcaaatcttcctgtgggagcagaacctggagcagttt
cacatggatctattccgcttcaggtgctacctggccagcctgcagggaggagagctgccc
aaccccaaacgcctcctggctgttgcctctcgccccaccaagcttgcaatgggccggctg
ggtatattctctgtctcttccttccatgcactggtggcagcacgcacagagaacggagtg
agacgaagaacacaggccatgtctcgttcctgcagcaagcgcaagagcaggttctcttcc
ctttggggtctggacactacctcaaagaaaaaaacaaaagcctatcccagtatcaatcag
caggtctttgctgatggcggagagccagtgaaaaagcctgtagatggcatacatgttgat
cttgcaaaggaacatacaaaaagtgaggaaggatgtgtgaaaagccttccacagcccagc
acggaaagtgacatctgggtccctgaccacctcaccccctcctgggtgtgtctgccaaat
gaccagccggtgctaaccatcattcagccaggggagtcagcactgtgcgttctggaaact
atctgcaaggctcaccagctggatcccaccaagcactacttgcgtctcaaattccttatc
gaaaaccaagtgcaattatacattcccaaaccagaagaggatgtgtgcgacttgctttac
aaagaaattgagctgtgctccaaaattacgaaagtgatccagtttgacagagatgaatcc
tgcatgattggttacggtttctccatttctgtggtggaggaggatggagtacagcagctc
tacatcacggatgtgaaggcgggcggattagccttcgccaaaggtctaaatgcaggggat
gaaatacttcagctgaacggaaaagattctcacggtctcaacttctccgacatgaaggcg
gctttctctcaagcttcgctggctttgacagtcaacaccctgccctctgtggaacgccgg
cagctctgctacctgccgccgcgctgctccgatgcagaggaagatctctacacggacatc
ttctcccagagtcaagaggagatcctggacgacggagtgggactgttgctcgggagctca
ggagacagcctggacgacgactctgagatcttcagcgagtttgagtgcagaaagagtaca
gagcaggtcgctgctttctgccgcagtctccatgacatgaatcccaccgagtgtgtgtcc
tcttcgcctagcccagactcgtcgtttccacctcgctcaactctccgacagctctctgat
gccgacaagctccgcaaagtcatctgtgaacttgtggagaccgaacgcacctatgtcaaa
gatcttaattgcctcatcgggagatatttaaccccactgcagaaagagacctttctcaca
caagatgagctcgatgtactgtttgggaacttgccagaaatggtggagttccaggttgag
tttctcaagaccctggaagacgggactagattggttccagatctagagaaattggagaga
gtggatcagtttaagaaaatcctcttctccctgggaggctcgttcctgtactatgcagac
cgtttcaaaatctacagtgctttctgcgccagccacaccaaagttcctaaggtcctcgta
aaggccaaaaccgatcatgaattcaagtccttcctggatgaccgcaaccccaagcagcag
cactcttccacccttgagtcatacctgatcaaacccatccaaagggtgctgaagtatccc
ctgctgctgaaggagctctacacgctcacagaccccgacagtgaggagcattaccacctg
gatgttgccatgaaagccatgaacaaagtggccagccacattaatgaaatgcagaagatc
cacgaggagtttggggcagtgttcgatctgctcatcactgagcaaagtggtgaaaagaaa
gaggtggctgatctgtccatgggtgacctgctactccacaccagtgtgacctggatcaac
ccccctgcctccttgggaaaatggaagaaagagccccagatagctacatttgtgttcaaa
acagcagtggtcttagtatgcaaggatggatccaagcagaagaagaaaatggttggctcc
catcgtgtctctatgtcgtctgaagaaaaagaccccttccgattccgtcatatgatccca
actgacgcacttcaagtcagatctttgggcaatgcagatggcgagggctcggctgtgtgt
gaaattgtccacataaagtctgagtcagagggaaggccagagaggacattccagctgtgc
tgtagttccccagagagtagaaaggactttctgaaaacagtccattccatcttgagggaa
aagcaccgccggcagctcctaaaaacggagagtttacccctcaaccagcagtatgtgccc
tttggaggaaagcgcctctgtgccctgaagggagcccgtcctgccataaatagagcagca
tctgcaccaaccagaactctaggcagaaggaagttagtgcgcaaccgtttcaccatagac
accgacattgtttttgatggcgagcccgaacaggaccttgcttcacctcaggagcccaag
tcgaatcggcagcagcaggacaacaaagcagatgagccgccgccgcagtcagagttagca
ggggacacagaccgctgggtggaagaacagttcgacctagaagaatacgaggacccagaa
gaggtgaaggagacggacattcttagtgatgaggacgagttctgtcaaacacccggagcg
ctggccgccgaggccgacctggaggcccgcgtcatggctttgtccttggaaactgaggag
agccttaagtccccacaggtcagcaggacgcctgatgatgtgaagcagagtgccgggatc
aatgaaaagcaaagggagaaggatgaaatttgggtaagaaggcagcgatccggttcgtcc
ccagactgtggcaaataa
DBGET
integrated database retrieval system
