Etheostoma cragini (Arkansas darter): 117948342
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Entry
117948342 CDS
T07493
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04010
MAPK signaling pathway
ecra04120
Ubiquitin mediated proteolysis
ecra04140
Autophagy - animal
ecra04144
Endocytosis
ecra04620
Toll-like receptor signaling pathway
ecra04621
NOD-like receptor signaling pathway
ecra04622
RIG-I-like receptor signaling pathway
ecra05132
Salmonella infection
ecra05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117948342 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117948342 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117948342 (traf6)
04140 Autophagy - animal
117948342 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
117948342 (traf6)
04621 NOD-like receptor signaling pathway
117948342 (traf6)
04622 RIG-I-like receptor signaling pathway
117948342 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117948342 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
117948342 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecra04131
]
117948342 (traf6)
04121 Ubiquitin system [BR:
ecra04121
]
117948342 (traf6)
Enzymes [BR:
ecra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117948342 (traf6)
Membrane trafficking [BR:
ecra04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
117948342 (traf6)
Ubiquitin system [BR:
ecra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
117948342 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
TRAF6_Z2
zf-C3HC4_4
zf-RING_5
RING_XB3-XBAT31
Sina_ZnF
U-box
TRAF3_RING
Prok-RING_4
zf-RING_11
zf-TRAF_2
Motif
Other DBs
NCBI-GeneID:
117948342
NCBI-ProteinID:
XP_034733833
LinkDB
All DBs
Position
1:8760119..8767770
Genome browser
AA seq
579 aa
AA seq
DB search
MFVVPAVLMACSESNKGSLEEDSYEGAVGGEMSGCALAMLEKERESLPSPSENHGTFISS
TSTSLLATAPLQGYDVEFDPPLESKYECPICLMALRNAIQTPCGHRFCKHCIEKSIRDTG
QRCPVDNERLLEDQLFPDNFAKREILSLTVRCPNSGCTEKMELRSLENHLKQCQFATVPC
PQCQQSVRKSHLEEHTTVECQRRPVSCPDCLACFVYEESELHEQQCPFASVKCQFCEMDL
IRDQMESHCDTDCPKAPIACNFSTFGCKERMQRHNLAQHMQEFTQMHMRYMAEFLRGLSL
NGTTPKSPWIPGPSVSSEDQEAAASGSACSGPRGAAGCSSNCATCPPSEEMQRLREMDGR
LVRQDHQLRELIILKETQAGHLAELRRRVSMLEETVRELESQQCNGIFIWRLKGFSVHLR
NQEAGQPVVEHSPGFYTGRPGYKLCLRLHLQTPNAPRCSNYISLFVHTMQGAFDGQLTWP
FQGTIRLTILDQGPEGQHHTEAMETKPDLQAFQKPTIQRNPKGFGYVTFLHLHQLSQRAF
VKDDTLLIRCEVTPRFDSMLHREGPTVQPRGHDAPVSRD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttgtgcctgctgttttgatggcgtgctctgaaagcaataaggggagtttggag
gaagacagctatgaaggagctgttggtggagagatgtccggctgtgcgttggcaatgctg
gaaaaggaacgggaatctcttcccagcccctcagagaaccatggcaccttcatcagcagc
acctccactagtcttctggccactgcacccctccagggctatgatgtggagtttgaccca
cccctagagagtaaatatgagtgccctatctgtctcatggctttgaggaatgccattcaa
acaccctgtggtcaccgtttctgcaagcactgcattgagaagtctattcgtgatacagga
cagaggtgtcctgtagacaatgaaagactgttagaagaccagttgtttccggataacttt
gccaaacgggagattctgtcgttaactgttcgctgtccaaactctggctgtactgagaag
atggagctccgaagtttagagaaccatttgaaacagtgtcagtttgccactgtgccttgc
ccacagtgccaacagtctgtgagaaagagccacctcgaggagcacacaactgttgagtgc
caaaggagacctgtgtcatgtccagattgtctggcatgctttgtttatgaggagagcgag
cttcatgagcagcagtgtccttttgccagtgtgaagtgccagttctgtgagatggatctc
atcagagaccagatggaatctcattgtgatacagattgcccaaaagcacccattgcctgt
aactttagcacctttggatgtaaggaaaggatgcagcgccacaacctggctcagcacatg
caggagttcacacagatgcacatgcgctacatggctgagttcctgcgtggcctgagcctc
aatggcaccacacccaaatccccttggattccaggaccttctgtttcctctgaggaccaa
gaagctgcagcatcaggatcagcctgtagtgggcccagaggggctgcaggctgcagcagc
aactgtgccacatgtccgcctagtgaggagatgcagaggcttagggagatggatggccga
ttggtaaggcaggatcaccagctgcgtgagctcatcatcttaaaagaaacacaggctggc
catcttgcagagttaaggcgtagagtgtcaatgctggaggagacggtaagggagctggag
tcgcagcagtgtaacggtatcttcatctggcgcctcaaaggtttctctgtccacctgcgg
aaccaagaagcaggccagccagtggtggagcacagccccggcttctacacgggccgtccc
ggctacaagctgtgcctgcgcttacacttgcagactcccaatgccccgcgctgctccaac
tacatctccctctttgtccacaccatgcaaggggcttttgacgggcagctgacctggccg
tttcagggcaccatccgccttaccatcctagaccagggccccgagggccagcaccacacg
gaggcgatggagactaaaccagacctgcaggccttccagaagcccacaatccagcgcaac
cccaaaggatttggctatgtcaccttcctgcacctgcatcagctgagtcagagagccttt
gttaaagatgacactctactcatccgctgtgaggtgacaccccgttttgacagtatgctt
caccgcgagggaccaacagtgcagcctaggggacacgatgccccagtttctagggactga
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