Etheostoma cragini (Arkansas darter): 117955392
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Entry
117955392 CDS
T07493
Name
(RefSeq) T-lymphoma invasion and metastasis-inducing protein 1-like isoform X1
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04530
Tight junction
ecra04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
117955392
09142 Cell motility
04810 Regulation of actin cytoskeleton
117955392
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ecra04990
]
117955392
Domain-containing proteins not elsewhere classified [BR:
ecra04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
117955392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
Tiam_CC_Ex
PH
RBD
PH_9
PDZ
PDZ_6
PDZ_2
RNA_pol_Rpc82
PH_11
Motif
Other DBs
NCBI-GeneID:
117955392
NCBI-ProteinID:
XP_034745749
LinkDB
All DBs
Position
13:complement(14079183..14135772)
Genome browser
AA seq
1694 aa
AA seq
DB search
MRLLNHSCIMGNVESQNGDSGFYGNATGHLSRKHTSRSLRLSSKQPITRRSRNSSSVKQE
HRNSDASTRSSSTPSIPQSLAENGLEPFNATDAFGEFGINPHWTQRVAMTMRPESYQHDD
DTLATPTPETSEADTIAHDGGEDSMGEGEGDVVGEERYLQRMTEGPREGGSFKKKRSKSA
DMWREDSLEFSLSDLSQEHLTSTEEIIDGGEEEEEEQFTCHRGNAGSAERASSLDHLCSQ
QSPGLRGQRSCYAKNRREAQCHGDGEGEEGLMSPTEEDGAGYGAFTLPCRRSHCLSEGLA
GLGMPAAPCPAFQGRRAQTTQDISGVLGEGSEYGDSGIDGVTTEMDRDGELVSRRCKTMS
ASFSVYSATESSVFNGSDSGSSSAGGGEGRGGEGGKGGVYENFRKELDNQAWTRMGRDCT
EEASSAVSDEQSSGTLSCAYPSDTLIGCAQGIVRKAGALAVKNFLVHKKNKKVEPATRRK
WKHYWVSLKGCTLFLYESDGRSGIDHNSVPKHALWVENSIVQAVPEHPKKDFVFCLSNSV
GDAFLFQTSGQTELENWITAIHSACAAALARLHHREDTVRLLRTEIRKLEQKIDMDEKMK
KMGDMQLSTVTDAKKRKTILEQIFLWEQNLERFHMDLFRCRCYLASLQGGEPPNPKRLLG
FASRPTKLAMGRLGIFSVSSFHALVSARTESSIRKRNQAMPRTFNKRRSRFSSLWGLDTT
SKRKSKGHPSINQVFVDGMEPVKKPLERMFEDSASEKSKEREGSVKSLPQQNVDSDIWVP
DYLTPSWVCLPNNRPVLAIIQPGETALEVLSNVCKTHKIDPSGHYLRLKMWIDNQMLFYV
PKLEEDISDLLYKEIEVCPKATKVIRFDKAESCTIGYGFSVAVIDEDGMQHLLVTDVKAE
GLASAKGLKAEDEILLLNGKPASALQMDDLRAAFLNQALTLSVSTLPLLDPRVLCSLPPR
RSDGEQGPATDIFSQSQEDILDEVSGLTVESPDDSLEEGSRLTLQSPGDQQEDKTCMGTG
KESTEQVTAFCRSLHDMNPLECPMSSSSSSSLSSLPPSPVSGFPPTAGTATQRQLSHADK
LRKVINELVETEKTYVKDLSCLIECYLTPLQKESFLTQDELDVLFGNLGEMVEFQVEFLR
TLEDGIRLVPDLDRLERVDQFKKVLFSLGGSFLYYADRFKIYSAFCASHTKVPKVLAKAK
TDPDFKAFLVERNPRQQHSSTLESYLIKPIQRVLKYPLLLKELYSLTDPDSEEHYHLDVA
IKTMNKVASHINEMQKLHEEYGAVFDQLINEQTADKKEVADLSMGDLLLHSTVLWINPPS
SLVKSKKDPDLAAFVFKTAIVFVYKDSSKHRKKIGPSHRASVSDDKDPFRFRHMIATDSL
QVRALANSEGTAVCEIVHTRSESEGRPEKTFQLCCSSPDSKKDFLKAVHSILREKQRRQL
LKTESLPLNQQYVPFGGKRLCALKGARPTMNRAASAPSQTLARRKLVRNRFTIDTDLVFH
GNNGNDSDALHHSSSPSSSSLSKHALPQSQKPQGEDTDRWVEEQFDLGCFEDQGEVIDMG
KVKETDILSDDDEYCKSVRAASAEPADLEGRMGGLDLQGRGVRSHNLNGRVESEREIMLS
RMQEEEVDRIKHGDDSGSVDSFASCSVSLSRCVTPTLKRAPLKQCAVEGATNKDHDAIWV
RRDDFANGCNSNVF
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcttaaccacagttgcatcatgggaaacgtggaaagtcagaatggggatagt
ggtttctatggcaatgcgacgggacatctctcccgcaagcacacgtccaggtcactccgt
ctctccagcaagcagccaatcacccgccgttcccggaactcttcttcagttaaacaggaa
cacagaaactctgatgcctcaactcgctcttccagcacccctagcatcccacaatcctta
gcagagaacgggctggaacctttcaacgcaacagatgcgtttggagagtttggcatcaac
cctcactggacacagcgcgtcgctatgacaatgaggccagagtcctatcaacacgatgac
gacaccttggccacaccaactcctgaaacctcagaggcagacactatcgctcatgatgga
ggagaggactccatgggggagggggagggagacgtcgttggtgaggaaaggtacctccag
cgaatgactgagggtccacgggagggagggagttttaaaaagaagaggtccaagtcagca
gacatgtggagggaagacagcctggagttctctctgtctgacctgagccaggagcatctg
accagcactgaggagataatagatggaggagaagaagaggaggaggagcagttcacatgc
cacagaggcaatgcaggctcagctgaaagggcatcgtctttggaccatctgtgcagccag
cagagtcctggcctcaggggtcagaggagctgctacgctaaaaaccggagagaagcccag
tgccatggggatggagaaggggaggaggggttgatgtctccaacagaggaggatggtgcc
ggctatggagcattcacgctcccctgccgacgctcccactgcctgtcggagggcttggca
gggctcggcatgcctgctgcaccatgccctgcttttcagggacgccgagcacaaactact
caggacatctctggtgttttgggcgagggaagcgagtatggagacagcggcatcgatggc
gtcaccacagagatggaccgggatggagagttggtgtcacgccgctgtaagaccatgtcg
gcctctttctcagtatactcggctactgagagcagtgttttcaacgggagcgacagcggg
agcagcagtgcgggaggaggagaaggacgtggcggcgagggaggcaagggaggagtgtat
gagaatttccggaaggagctggacaatcaagcctggacacgtatgggtagagactgcacg
gaggaggctagctccgctgtgagtgatgagcagagcagcggcacactcagttgtgcatat
ccatcggacactctgattggctgtgcacaaggcatagtcaggaaagcaggagctctggct
gtaaagaacttcttggtccataaaaaaaacaagaaggttgaacctgcaacaaggcgcaag
tggaaacactactgggtctctctgaaaggctgcactcttttcctgtacgagtcagacgga
cgttctggtatcgaccataatagcgttcccaaacatgctttgtgggtggagaacagcatt
gtccaggccgtacctgaacaccccaagaaagactttgtcttctgcctcagcaactccgtg
ggtgatgctttcctcttccagacgtcaggccagacagaactggagaactggatcacggcg
atccactctgcgtgcgctgctgctctcgctcggctacaccacagggaggatacagtgcga
ctgctgcgaaccgagatccgcaagctggagcagaagatcgacatggacgagaagatgaag
aagatgggagacatgcagctgtcgaccgtcactgacgccaagaagaggaaaaccatactg
gagcagatcttcctgtgggagcagaacttggagcggtttcacatggatctgttccgctgt
cggtgctacctggccagtctgcagggcggcgaaccccccaaccccaaacgcctgctgggc
tttgcttcgcgccccaccaagctggccatgggacgactgggtatcttctctgtgtcttct
tttcatgcactggtgtcggcccgtacagaaagcagcatcaggaagcggaaccaggccatg
cctcgtaccttcaataaacgtcgtagccgtttctcctccctttggggtctggacaccacc
tcaaagaggaagtccaagggacatccttcaatcaaccaggtgtttgttgatgggatggag
ccagtgaaaaagccattggagcgcatgtttgaagactctgccagtgagaaatctaaagag
agagagggctcggtgaaaagtcttccccagcaaaatgtagacagtgacatttgggttccc
gattacctgactccctcctgggtgtgtctgccaaacaatcggcctgtcctggccatcata
cagcccggtgagacagcgctggaagtccttagcaacgtctgcaagacccataaaatagac
ccctctggccactatctgcgtttgaagatgtggattgacaaccaaatgctcttctatgtt
cccaaacttgaagaggacatctctgatttgctctacaaagagattgaggtttgccccaaa
gctaccaaggtgatccggtttgacaaagccgagtcctgcaccattggatacggtttttct
gtggcggttatagatgaggatggaatgcagcatctccttgttactgacgtgaaagcagag
ggactggcctcagctaaaggtttgaaagcagaggatgagattctcttgctaaatggaaaa
cctgcatctgccctccaaatggatgatttgagggctgcctttctaaaccaagcgttgacc
ttgagtgtcagcaccctgccgttgctagaccctagggtgctgtgctcccttccaccccgg
cggtccgatggggagcagggcccagccacagacatcttctcccagagccaagaggacatc
ctggatgaggtgtcggggttgacggtggagagcccagatgacagcttggaggaaggttct
cggctgaccctgcagagtcccggagatcaacaggaagacaaaacttgcatggggactggg
aaggagagcacagagcaggtgactgctttttgccgcagtctccatgacatgaatcccctg
gagtgccctatgtcatcctcctcatcgtcttccttgtcgtccctacccccaagccctgtg
tcaggttttccgcccacagcaggcactgccacccagagacagctctcccatgcagacaaa
ctccgcaaggtcatcaatgagctggtggagacggagaagacttatgtcaaagacctgagc
tgtctaatagaatgctacttgacacctttgcagaaagagagcttccttacacaagatgag
ctggatgttttgtttggtaacctcggggagatggtggagttccaggtggagtttctccgg
acgctggaagatggaatcagactggtgccagatctggacagactggaaagggttgatcag
tttaagaaagtgctgttctctttgggtggttccttcctgtattatgccgatcgcttcaag
atctacagcgccttctgcgccagccacaccaaggtcccaaaggtcctggctaaagcaaag
actgacccagatttcaaggctttcctggttgagagaaaccccagacagcagcattcctcc
actctggaatcttacctgatcaaacccatccagagggtcctgaagtatccacttttgtta
aaggagctctactctcttactgaccctgacagtgaggaacactaccatctggatgttgca
ataaagaccatgaacaaagttgcaagtcacatcaatgagatgcaaaagcttcatgaggag
tacggcgctgttttcgaccagctcatcaacgaacagacagcagataaaaaagaggtggct
gacctctccatgggggatcttttgctacattcgaccgtgctgtggatcaatcctccaagc
tctttggtcaagagcaaaaaggaccctgatttggctgcttttgtgtttaaaacagcgatt
gtatttgtgtacaaagacagctccaagcacagaaaaaaaatcggtccatctcaccgtgcg
tccgtgagtgatgacaaagatcctttccgtttccgtcacatgattgcaacggactctctg
caagtccgtgcccttgcaaactctgagggtacagcggtgtgcgagattgttcacacaaga
tctgaatctgaaggacgaccagagaaaaccttccagttgtgctgcagttctccagatagt
aagaaggacttcctgaaagcagtccactctatcctaagggaaaaacagcggcggcagcta
cttaagacggagtctctgccactcaaccagcagtacgtcccatttgggggcaaacgtctg
tgtgccctcaaaggggcgcggcccaccatgaacagagcagcatcagctccatcccaaacg
ctggcccgcaggaagctggtgaggaaccgcttcaccatcgacaccgacctggttttccat
ggcaacaacggcaacgattcagacgccttacaccactcttcatccccttcctcctcgtcg
ctgtccaagcatgcccttcctcaatcccagaaacctcaaggagaggacacagaccgttgg
gtggaggagcagttcgacctgggttgcttcgaagaccagggtgaggtcatcgacatgggg
aaggtgaaggagactgatattttgagcgatgacgacgagtactgcaagtctgtccgagcc
gcgtcggcagaaccagccgacctggaggggaggatggggggacttgacctacagggcaga
ggggtgaggagccacaacctgaacggacgagtggagtctgaaagggagatcatgctgagt
aggatgcaggaggaggaagttgatcgaataaagcatggtgatgattcaggctcggttgac
tcttttgcctcctgcagtgtctctctgtcccgctgtgtgaccccgactctaaagcgcgcc
cccttaaagcagtgtgctgtggagggggccacaaataaggaccacgatgccatctgggtg
cggcgggacgactttgctaacgggtgcaacagcaatgtcttctga
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integrated database retrieval system
