KEGG   Etheostoma cragini (Arkansas darter): 117957260
Entry
117957260         CDS       T07493                                 
Name
(RefSeq) tumor necrosis factor-like
  KO
K03156  tumor necrosis factor superfamily, member 2
Organism
ecra  Etheostoma cragini (Arkansas darter)
Pathway
ecra04010  MAPK signaling pathway
ecra04060  Cytokine-cytokine receptor interaction
ecra04150  mTOR signaling pathway
ecra04210  Apoptosis
ecra04217  Necroptosis
ecra04350  TGF-beta signaling pathway
ecra04620  Toll-like receptor signaling pathway
ecra04621  NOD-like receptor signaling pathway
ecra04622  RIG-I-like receptor signaling pathway
ecra04625  C-type lectin receptor signaling pathway
ecra04920  Adipocytokine signaling pathway
ecra05132  Salmonella infection
ecra05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ecra00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    117957260
   04350 TGF-beta signaling pathway
    117957260
   04150 mTOR signaling pathway
    117957260
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    117957260
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    117957260
   04217 Necroptosis
    117957260
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    117957260
   04621 NOD-like receptor signaling pathway
    117957260
   04622 RIG-I-like receptor signaling pathway
    117957260
   04625 C-type lectin receptor signaling pathway
    117957260
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    117957260
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    117957260
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    117957260
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:ecra04052]
    117957260
   00536 Glycosaminoglycan binding proteins [BR:ecra00536]
    117957260
Cytokines and neuropeptides [BR:ecra04052]
 Cytokines
  Tumor necrosis fators
   117957260
Glycosaminoglycan binding proteins [BR:ecra00536]
 Heparan sulfate / Heparin
  Cytokines
   117957260
SSDB
Motif
Pfam: TNF
Other DBs
NCBI-GeneID: 117957260
NCBI-ProteinID: XP_034748768
LinkDB
Position
14:complement(3905543..3908056)
AA seq 313 aa
MCVGVWCVRSSPVLVFLPHQIKSPLTKSDITGVSQEVTLLKGPIAKCQSTNQRDSRRAQL
HLKLKKELIKTMEGECKVQLEAAVDTEARTQTLRVKPSSKLTTALLVFTLCLAAAAVAFL
IVNRHAKGPGPDEDNFDLHHTLRQISNVRAAIHLEGEYNPKRKTSVEWKKDVDQSHFQGG
LELNNNEIIIPRRGLYFVYSQASFRVNCFSSDADDYTSKSMVHLSHTVKRWSKSYGADDS
IKSYQTILHSVRTACQKNANSQRDEEGSWFSAVYMGAVFNLDKGDRLKTVMEEKMLQDLE
DGPGKTFFGVFAL
NT seq 942 nt   +upstreamnt  +downstreamnt
atgtgtgtaggagtgtggtgtgtaagatcctccccggttttggtctttcttcctcatcaa
atcaaatctccactcacaaagagtgacatcactggagtttcccaggaggttactctttta
aaagggccaatagctaagtgtcaatcaacaaaccagagagacagcagaagagctcaactg
cacttgaagttaaagaaggaactcatcaaaacaatggaaggagaatgcaaggtacaactg
gaagcagctgtggacacagaagccaggacacagacactgcgagtcaaacccagctcaaaa
ctaaccacagccctgctggtgttcacactctgcctagctgctgctgctgttgctttcctc
atcgtcaacaggcatgccaagggcccaggaccagatgaagacaattttgatcttcatcac
acattgaggcaaatttcaaatgtcagagcggccattcatttagaaggagaatacaaccct
aagaggaaaacatcagtggaatggaagaaggatgtggaccagtcccactttcaaggaggg
ctagaacttaacaacaatgaaattattattcctcgaagaggcctctactttgtttacagc
caagcgtctttccgggtaaactgcttcagcagcgatgctgatgactacacctcaaagtcc
atggtccacctgagccacactgtgaagcgctggtccaaatcgtatggggctgacgactcc
ataaagtcctaccagaccatcctgcactctgtccgtactgcctgccaaaagaatgccaac
agccagcgagacgaggaggggagctggttctcggccgtgtacatgggagctgtgtttaac
ctagacaaaggagacagactcaagacggtgatggaagagaagatgctgcaggacctggaa
gatgggccagggaagacattcttcggtgtgtttgccttgtga

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