Etheostoma cragini (Arkansas darter): 117957260
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Entry
117957260 CDS
T07493
Name
(RefSeq) tumor necrosis factor-like
KO
K03156
tumor necrosis factor superfamily, member 2
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04010
MAPK signaling pathway
ecra04060
Cytokine-cytokine receptor interaction
ecra04150
mTOR signaling pathway
ecra04210
Apoptosis
ecra04217
Necroptosis
ecra04350
TGF-beta signaling pathway
ecra04620
Toll-like receptor signaling pathway
ecra04621
NOD-like receptor signaling pathway
ecra04622
RIG-I-like receptor signaling pathway
ecra04625
C-type lectin receptor signaling pathway
ecra04920
Adipocytokine signaling pathway
ecra05132
Salmonella infection
ecra05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117957260
04350 TGF-beta signaling pathway
117957260
04150 mTOR signaling pathway
117957260
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
117957260
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
117957260
04217 Necroptosis
117957260
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
117957260
04621 NOD-like receptor signaling pathway
117957260
04622 RIG-I-like receptor signaling pathway
117957260
04625 C-type lectin receptor signaling pathway
117957260
09152 Endocrine system
04920 Adipocytokine signaling pathway
117957260
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117957260
09171 Infectious disease: bacterial
05132 Salmonella infection
117957260
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
ecra04052
]
117957260
00536 Glycosaminoglycan binding proteins [BR:
ecra00536
]
117957260
Cytokines and neuropeptides [BR:
ecra04052
]
Cytokines
Tumor necrosis fators
117957260
Glycosaminoglycan binding proteins [BR:
ecra00536
]
Heparan sulfate / Heparin
Cytokines
117957260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNF
Motif
Other DBs
NCBI-GeneID:
117957260
NCBI-ProteinID:
XP_034748768
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All DBs
Position
14:complement(3905543..3908056)
Genome browser
AA seq
313 aa
AA seq
DB search
MCVGVWCVRSSPVLVFLPHQIKSPLTKSDITGVSQEVTLLKGPIAKCQSTNQRDSRRAQL
HLKLKKELIKTMEGECKVQLEAAVDTEARTQTLRVKPSSKLTTALLVFTLCLAAAAVAFL
IVNRHAKGPGPDEDNFDLHHTLRQISNVRAAIHLEGEYNPKRKTSVEWKKDVDQSHFQGG
LELNNNEIIIPRRGLYFVYSQASFRVNCFSSDADDYTSKSMVHLSHTVKRWSKSYGADDS
IKSYQTILHSVRTACQKNANSQRDEEGSWFSAVYMGAVFNLDKGDRLKTVMEEKMLQDLE
DGPGKTFFGVFAL
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgtaggagtgtggtgtgtaagatcctccccggttttggtctttcttcctcatcaa
atcaaatctccactcacaaagagtgacatcactggagtttcccaggaggttactctttta
aaagggccaatagctaagtgtcaatcaacaaaccagagagacagcagaagagctcaactg
cacttgaagttaaagaaggaactcatcaaaacaatggaaggagaatgcaaggtacaactg
gaagcagctgtggacacagaagccaggacacagacactgcgagtcaaacccagctcaaaa
ctaaccacagccctgctggtgttcacactctgcctagctgctgctgctgttgctttcctc
atcgtcaacaggcatgccaagggcccaggaccagatgaagacaattttgatcttcatcac
acattgaggcaaatttcaaatgtcagagcggccattcatttagaaggagaatacaaccct
aagaggaaaacatcagtggaatggaagaaggatgtggaccagtcccactttcaaggaggg
ctagaacttaacaacaatgaaattattattcctcgaagaggcctctactttgtttacagc
caagcgtctttccgggtaaactgcttcagcagcgatgctgatgactacacctcaaagtcc
atggtccacctgagccacactgtgaagcgctggtccaaatcgtatggggctgacgactcc
ataaagtcctaccagaccatcctgcactctgtccgtactgcctgccaaaagaatgccaac
agccagcgagacgaggaggggagctggttctcggccgtgtacatgggagctgtgtttaac
ctagacaaaggagacagactcaagacggtgatggaagagaagatgctgcaggacctggaa
gatgggccagggaagacattcttcggtgtgtttgccttgtga
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