Etheostoma cragini (Arkansas darter): 117958407
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Entry
117958407 CDS
T07493
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117958407 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecra03041
]
117958407 (eftud2)
Spliceosome [BR:
ecra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117958407 (eftud2)
Complex C
U5 SnRNP specific factors
117958407 (eftud2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
117958407
NCBI-ProteinID:
XP_034750654
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Position
15:15081052..15093638
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AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDDEDDLDAGDRDVDEGDEDDDDEPADADEDVPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKNKQFTLMEQELPATVYDMEFLAD
LMDGPELIRNITLCGHLHHGKTCFVDCLIEQTHPEIRKRDDVDLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSSIRISDGVVLFIDAAEGVMLNTER
LIKHAVQERMAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNGLLSTYSTDENLVVS
PLLGNVCFASSQYSICFTLGSFAKIYSDTHGDINYNDFAQRLWGDIYFNPKTRKFTKKAP
SSNSQRSFVEFVLEPLYKILSQVVGDCDTSLPRVLDELGIHLSKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVHHIPSPQEGARNKIEHTYAGGMDSDLGEAMAECDPDGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTLGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNIASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPL
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgatctgtatgacgagtttggaaactacatcggtccagagctggactctgat
gacgatgaagatgatctggatgcaggggacagagatgttgacgagggtgacgaagatgat
gatgatgagcctgctgatgctgatgaggatgtcccgggtatggaggtggtcctgcatgag
gacaagaagtactatcctacagcagaggaggtttatgggccggaagtggaaactattgtc
caagaggaagatacacaacctctcacagagcctatcatcaagcctgtgaagaacaagcag
ttcaccctgatggagcaggagttacctgccactgtttatgatatggaattccttgctgat
ctaatggacggtcctgagctaatccgtaacatcaccctgtgtggtcaccttcaccacggc
aagacttgttttgtggactgcctgattgaacagacgcacccagaaatcaggaaaagagat
gatgtggatctccgttacacagacatcctctttacagaacaggagagaggagttggtatc
aagagcacccctgtcacaatggtcctaccagactccaggggcaaatcttaccttttcaac
atcatggatacaccaggccacgtcaacttttctgacgaggtcacatccagcatccggatc
tcagacggtgttgtcctcttcatagacgcagcagaaggagtgatgctgaacaccgagcgc
ctgatcaaacatgcagttcaggagcgtatggccatcaccatctgcatcaacaaggtggac
cggctcattgtggagctcaaattgcctcccacagatgcttattataaacttcgtcacatt
gtggatgaggtcaatggtttgctcagcacatactcgacagacgagaacttggtggtgtct
cctctccttggaaatgtgtgcttcgccagctctcagtacagcatctgtttcactctgggt
tcctttgcaaagatctactcagacacccatggtgacatcaactataatgattttgcccag
aggctttggggagacatttatttcaaccccaaaactcgcaagttcacaaagaaagctccc
agcagtaactctcagcgcagctttgtggaatttgtcctggagcctctctacaagatcctc
tcacaggtggttggggattgtgacacatctctccccagagttctggatgagttggggatc
cacctgagtaaagaggaactgaagctgaacatcagacccttactgaggctggtctgtaac
cgcttctttggagagttcactggctttgtggacatgtgtgtacatcacatcccctcacca
caggagggtgctcggaacaagatagagcacacatacgctggaggtatggactcagacctt
ggggaggccatggcagagtgcgaccctgatggtcccttgatgtgccacaccactaagatg
tacagcacagaggatggggttcagttccatgcctttggcagggtgctgagtgggaccatt
caggccggacagcctgtcaaggttttaggagagaactacacccttgaagatgaagaggac
tcccaggtctgcactttgggccgtctctggatttcagttgccagataccaaattgaagtg
aaccgagtgccagcaggcaactgggttctcattgaaggttgtgaccagccaatcgtcaag
accgccacaatcacagagcccagagggaatgaagaggctcagattttcaggccactaaag
ttcaacatagcatcggttataaagattgcagtggagcctgtcaacccatctgagctaccg
aaaatgttggacggactaaggaaggtcaacaaaagctatccgtctctcaccacaaaggtg
gaggagtctggagagcacgttatcttggggacaggggagctctacctggactgtgtcatg
cacgacctgcgaaagatgtactccgagatcgacattaaagtcgctgatcctgttgtgact
ttctgtgaaacagttgtggaaacatcatcactcaagtgcttcgctgaaacgccaaacaaa
aagaataagatcaccatgattgctgagcccttggagaaggggctggctgaggacatagag
aacgaagtggtgcagatcacatggaacaggaagaagctgggtgagtttttccaaacaaag
tacgactgggatctgctggccgccaggtccatctgggccttcggaccagacaccacggga
ccaaacatccttgtagacgacacactgccctccgaggtggacaaggcgctgctcggctca
gtcaaagacagcatagttcagggcttccagtggggcaccagggaggggccgctgtgtgat
gagcccatcaggaatgtcaagtttaagatccttgacgcagtcattgctcaggagcctctc
caccgaggagggggccaggtcatccctacagccaggagagtggtgtactctgctttcctc
atggccactccaaggttgatggagccttattactttgtggaggttcaggctcccgctgat
tgtgtttctgccgtctacacagtgctggctcgcagaaggggtcatgtcacccaggatgca
cctattccagggtctcctctctacaccatcaaggctttcatcccggccattgactccttt
ggctttgagacagatcttcgcactcatacacagggacaggcctttgccctgtccgtgttc
caccactggcagatcgtccctggtgaccctttagacaagagtattgtgatcaggcctctt
gagcctcagcctgccccccacctggcgagagagttcatgatcaagacccgaaggcgcaag
ggtctgagcgaggatgtgagcatcagcaagttcttcgacgatcctatgttgttggagctg
gccaaacaggacgtggtgcttaactaccccctgtga
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