Etheostoma cragini (Arkansas darter): 117958690
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Entry
117958690 CDS
T07493
Symbol
kdm2aa
Name
(RefSeq) lysine (K)-specific demethylase 2Aa isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117958690 (kdm2aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117958690 (kdm2aa)
04121 Ubiquitin system [BR:
ecra04121
]
117958690 (kdm2aa)
03036 Chromosome and associated proteins [BR:
ecra03036
]
117958690 (kdm2aa)
Enzymes [BR:
ecra01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
117958690 (kdm2aa)
Transcription factors [BR:
ecra03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
117958690 (kdm2aa)
Ubiquitin system [BR:
ecra04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
117958690 (kdm2aa)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
117958690 (kdm2aa)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
117958690 (kdm2aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JmjC
JHD
F-box
Cupin_8
PHD
C1_1
Motif
Other DBs
NCBI-GeneID:
117958690
NCBI-ProteinID:
XP_034751143
LinkDB
All DBs
Position
2:complement(2963471..2992013)
Genome browser
AA seq
1332 aa
AA seq
DB search
MDDSKPRYSKRLRAGTRRRYHDDGISDEEIDGRRMFDLEEKVHSQRFSSNRVLRMEGKDL
TFEFIQRGGLRDPIVFEKPDGLGLKMPDPDFSVNDVKMFVGSRRMIDVMDVSTQKGTEMS
MAQWTRYYETPPSQREKLYNVISLEFSHTKLENLVRRPATVDLIDWVDNMWPRHLKERQR
DSTNSINDMQYPKVQKYCLMSVEGCYTDFHIDFGGTSVWYHILRGSKVFWLIPPTPQNLE
LYENWVLSGKQGDIFLGDRASECQRIELKQGCTFIIPSGWIHAVYTPVDSMVFGGNFLHS
FNIPMQLNICNIEDRTRVPLKFRYPFYYEMCWYVLERYVFSMTKTSYLTPEFQKHTLGIG
LKKPAGPDPASEQVEEEEDSGGSDEDTSEQQSDKPAVKLYLTPLELEGMWNLLGKLESLP
SNKKCVPAGIHNAPALITHIKALLKEHANDNPKLSYTGKPIVKWPKRPSWYQPPPPPPPP
PRPKLATIPIIPRPQKPASSMSVLRRRRVRCKRCEACMRPECGDCNFCRDMKKFGGPGKL
KQTCVLRQCLSPGLPLSAVCEICKEPNQEETGDPSLTLMECSNCAQIVHPACLTVQGEGV
VNKDLPSCWECPKCVQGITDPESSGSDEPLAAGQQHIRPLGPLVLRLGPGPSATIGGPVG
TQQDGEVVRCGFFPPPSLPSCSSSSSASLLLVAAPLPSQPISSRLQSKGDKGEGLPVKRK
SSTLLDARMAKIYRRQRHSRDGDDSASDDDDDDDEACQRRKGALHTRGGSHSSRRGFGAN
RRGLLRGGSSHRGSRGGLMTPSSSSSLKLKRGMGMREGGRRGRGVRLRGGSRMQRRGDDS
EESDDDDDDDEDDDDEEEDSEDGDKERVHRRCRRRRRTDDDEDEDSDGQDFDPEEDEMDT
LEDEEEEEEEEVEEEGRWDSDPEPPVLLVSDLNDDLLSGSYLTVTLQRPHKAKRHSGSIV
PKLEAAMGLRTAAGGAGSQQGFIQKKTALSKPSRLKSADTTADSITPRGPGRPRLRGNHG
DRGTKDHSATSSEEDEIAATPAPSSLSPPSLLSLPSFKDVGNERGGEKEVWVSVFRYLNR
AELLACMIVCKAWYKWSCDKRLWSHVDVSRCSPLSNQALAGIIKRQPTSLDLSWTPLAKR
QLNCLLTRLPGLRELRVTGLSWSCLSAMVSPTLPYLRLLDLRWCEGLKDAQIKETITPPG
SESSRSRLRNMVTLRLSGLDISESTLRLLQRHMPQLERLDLAHCKDITDSCIALLAAAGT
HTRNTLTELTLAGCSELTDSCLSYLKRLSSLTLLDLRGCKGISRRACDAFISDLSHVALY
CMMEEKLIQRLD
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atggatgattccaagccgaggtacagcaaaaggctgcgggctggtacccgacgacgttac
catgacgacggcatctcagatgaggaaattgatggaaggaggatgtttgatctggaggag
aaagtccacagtcagaggttcagctctaaccgggtcctgcgcatggaaggaaaagacttg
acatttgagttcatccagagaggcggcctgagggacccaatcgtctttgagaagcctgat
ggactgggactcaagatgccggatcctgacttcagtgtcaatgatgtcaagatgtttgtt
ggtagcagacgtatgatagatgtgatggacgtcagcactcagaaggggacagagatgtcc
atggcccagtggacacgttactatgagacccctccatctcagagagagaagctttataat
gtcatcagcctggagttcagccacaccaagctggagaacctggtcaggagacctgccaca
gtagacctaatagactgggtggacaacatgtggcctcgtcacctgaaagagagacagaga
gactcaaccaactctatcaatgacatgcagtaccccaaagtacagaagtactgtctaatg
agtgttgagggctgctacacagactttcacattgactttggcgggacctcagtgtggtac
cacatactcagaggaagcaaggtgttctggctgatcccccccaccccgcagaacctggag
ctgtatgagaactgggtgctgtcggggaaacagggagacattttccttggagatcgagca
tctgaatgccaaaggattgaactaaagcagggctgcaccttcatcataccctctggttgg
attcatgccgtttacacccctgtggactctatggtgtttggaggaaactttctgcacagc
ttcaacatccctatgcaacttaacatctgtaatatagaagacagaacgcgggttccattg
aaatttcgttaccccttctactacgagatgtgctggtacgtgttggagcgctacgtcttc
agcatgacaaagacctcctacctcacgccagagtttcagaaacacacgctgggcattggt
ctgaagaagccggcaggcccagatccagccagtgaacaagtggaggaggaggaggacagt
gggggcagtgatgaagacacttcagagcagcaatctgacaagcctgcagtgaagctttat
ttgactccccttgagctggaaggaatgtggaatctcctcggtaaactggagtctctgccc
tccaacaaaaagtgtgtcccagcgggcatacacaatgctccggcactcattacacacatc
aaggctctactgaaggaacatgcgaatgacaatcccaaactgtcctacacaggaaaaccc
attgtcaagtggccaaaaagaccctcatggtaccagcctcctcctcctccaccacctcct
cctcgtcctaaattggccaccattcccatcatcccacgaccacagaaaccagcctcctcc
atgtctgtgctgagacggcgcagggtcaggtgtaagcgctgtgaagcctgtatgagacca
gaatgtggagactgtaacttctgcagagacatgaagaagtttggaggaccagggaagctt
aagcagacctgtgtgcttcgacagtgtctctctccgggccttcctctgtctgcagtatgt
gagatctgcaaggagcccaaccaggaggaaactggagacccctccctcactctgatggag
tgttccaactgtgcgcagatagtccatccggcctgcctcacggttcagggtgaaggagtg
gtgaataaagacctgcccagttgctgggagtgtccaaagtgtgtccaagggatcactgac
ccagagtcatcaggcagtgatgaaccgttggctgcaggccagcagcacatccgtcccctt
ggccccctggtccttagactgggccccgggccctctgctaccatagggggtcctgtgggc
acccagcaggatggggaggtggtccgctgtggtttcttccctcctccttctcttccttcc
tgctcttcttcctcctcagcgtcacttctattggtggcggcccctctgccttctcagcca
atcagctcgagactgcagtctaaaggagacaaaggtgaaggccttccagtgaaacggaaa
tcttccaccctgttggatgctcgtatggctaagatttatagacgacagcgacacagccgc
gatggagacgactctgctagtgatgatgatgatgatgatgatgaagcctgtcagagaaga
aagggggcactccatacccgaggcgggagccactcttccaggagagggtttggtgccaac
aggagaggcctgctgagaggaggctcgtcccacagaggaagcagaggaggactcatgact
cccagctcctcctcttccctcaagctaaagcgagggatgggcatgagggagggagggcgg
aggggacgaggggtgaggctgaggggaggctccaggatgcagcgcagaggagacgactcc
gaggagtcagacgatgacgacgatgatgacgaagacgacgacgacgaggaagaagacagt
gaagacggagacaaagaacgagtgcatcgtcgatgtaggaggaggcgcaggacggacgat
gatgaagatgaggacagtgatgggcaggactttgaccctgaagaggacgagatggacacc
ctggaagatgaagaggaggaagaggaggaggaggtggaggaggaagggcgctgggattca
gatccagaacctcctgtcctcttggtttctgatctgaatgatgacctgctgagtggctcc
tatctcactgtcactctacagcgcccccacaaggccaagagacactctggctccattgtt
ccaaagctggaagcagccatgggtctgaggacagctgctgggggtgctggtagtcagcag
ggcttcatccaaaaaaagactgctctgtccaaaccttcacgactcaagagcgctgacacc
acagctgacagtattaccccaagagggcctggcaggccacgtctgcggggtaaccatggc
gacagaggcactaaagatcactcagcgacttcttcagaggaagatgaaattgctgctact
ccggcaccttcctccctgtctcctccatccctgctgtctctgccatcttttaaggacgtg
ggcaacgagagaggaggggagaaggaggtgtgggtgtctgtgttcaggtacttgaacaga
gctgagctgctggcctgcatgattgtctgtaaggcctggtacaagtggagctgtgacaag
cgtctgtggagccacgtggatgtgagtcggtgcagtccgctcagtaaccaggccctggca
ggcatcattaaacgccagcccacctctctggacctgtcctggacccccctggccaagaga
cagcttaactgtctgctcaccagactcccaggtctgagggagttaagagtgactggtctg
tcctggtcctgtctgtcagcgatggtctctcccactctgccctacctgcggcttctggac
ctgcgctggtgtgaaggcctcaaagatgcccagattaaagagaccatcaccccacctggt
tcagagtcgtcccgcagcagactgaggaacatggtgacactgcgtctgtccggtctggac
atcagtgagtccactctgaggctgcttcagcgccatatgccccagctggagaggctggac
ctggctcactgcaaagacatcaccgactcgtgtatcgctctgctggcagcagccgggact
cacacccgcaacactctcaccgaacttacactggcaggttgcagtgagctgacagacagc
tgtctgtcctacctgaagagactttcctctctgactctgctggacctcagaggctgtaaa
ggcatcagcagacgtgcatgtgacgccttcatctctgacctgtcccatgttgccctctac
tgtatgatggaggagaagctcatccaacgcctggattaa
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integrated database retrieval system
