Etheostoma cragini (Arkansas darter): 117961504 Help Entry 117961504         CDS       T07493                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism ecra  Etheostoma cragini (Arkansas darter) Pathway ecra04115   p53 signaling pathway ecra04145   Phagosome ecra04148   Efferocytosis ecra04350   TGF-beta signaling pathway ecra04510   Focal adhesion ecra04512   ECM-receptor interaction ecra04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ecra00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     117961504 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     117961504 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     117961504 (thbs1b)    04148 Efferocytosis     117961504 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     117961504 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     117961504 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     117961504 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:ecra04131]     117961504 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ecra00536]     117961504 (thbs1b) Membrane trafficking [BR:ecra04131]  Endocytosis   Phagocytosis    Opsonins     117961504 (thbs1b) Glycosaminoglycan binding proteins [BR:ecra00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    117961504 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 Laminin_G_3 cEGF TSP1_ADAMTS EGF TSP1_CCN Motif Other DBs NCBI-GeneID:  117961504 NCBI-ProteinID:  XP_034756124 LinkDB All DBs Position 18:5351249..5364132 Genome browser AA seq 1169 aa AA seqDB search MKLTGIFLLLMFWTCESARVAESRDDNSVYDLFELVKVPKKNHGVTLVKGDDPYSPAYKI LNPDLIPPVPESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKQDGSGPVFEIVS NGKANTLDIVFSTEKKQQVVSIEDVDLATGHWKNITLFVQEDWAQLYAGCEEVSTAELDA PIQSILTQETPDSAQLRIGKGAVKDRFMGVLQNVRFVFGASLEAILRNKGCQSSMTTDSM ILENLNGSSAIRTEYTGHKTKDLHMVCGFSCEDLVSMFKELKGLGVVVKELSNELRQLTD ENKLIKNRIGIHSGVCIHNGIVHKNRDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR DCYLQECDKRFKQDGSWSHWSPWSSCSVTCDAGVITRIRLCNSPTPQLGGKDCEGEGRQT EKCQKSQCPINGNWGPWSPWDTCTLTCGGGFQTRKRLCNDPAPKYGGKECVGNAKDTQLC NKKACPIDGCLSNPCFAGSKCTSFPDGSWKCGKCPAGYTGNGIKCKDVDECKEVPDACFE FKGVHRCENTDPGYNCLPCPPRYSGPQPFGRGVEQAVAKKQVCTPRNPCLDGSHDCNKNA RCNYLGQFADPMYRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL PNSGQEDYDKDNIGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS NPDQTDTDSNGEGDACAVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPLEHN PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYISNANQVDHDKDGKGDACDYDDDND GIPDDKDNCRLAFNPDQLDSDGDGRGDACKNDFDQDNVPDIYDVCPENFDISETDFRKFQ MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDD YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW HTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGSLYDK TYAGGRLGLFVFSQEMVYFSDLKYECRDV NT seq 3510 nt NT seq  +upstreamnt  +downstreamnt atgaagttgacagggatatttttgctattgatgttttggacctgcgagagtgcgcgagtc gcagagagccgagacgacaatagtgtgtatgacttgtttgagctcgtcaaagtcccgaaa aagaaccacggggtcaccctagtgaaaggagacgacccgtacagccccgcctacaagatc ctcaacccagacctgattcccccagtccccgagagcgcctttagggacctgatcgactcc atccacgccgagaggggattcctcctcctgctcaacttcaagcagttcaagcggaccagg ggaagcctcttgaccgtggagaagcaggacggttccggacccgtatttgagatagtctcc aacggcaaggcgaacaccttagacatcgttttctccaccgagaaaaagcagcaggtggtt tccattgaagatgtggatctggccacgggccactggaagaacatcacgttgttcgtgcag gaggactgggcgcagctgtacgcgggatgcgaggaggtgagcaccgccgagttggatgcg cccatccagagcatcctgacgcaggagaccccggacagcgcgcagctccggattgggaag ggagccgtgaaggacagattcatgggggtcttacaaaacgtgcgttttgtgtttggagca tcactagaggccatcctccgtaacaaaggatgccagagctccatgaccactgactcaatg attctggagaacctcaatggctcctctgccattagaacagagtacactggacacaagact aaagacctgcatatggtctgcggcttctcctgtgaggacctggtcagcatgtttaaggag ctgaagggcctcggtgtggtggtcaaggagctgtccaatgaactccgccaactgacggat gagaacaagctgattaagaaccgcattggcattcacagcggcgtctgcatccacaacggc attgtgcacaagaaccgagacgagtggaccgttgatgactgcacagagtgcacttgtcag aactctgcgactgtgtgccgcaagatctcctgcccccttattccctgtgctaatgctact gttcctgatggagagtgctgtccacgctgtggaacaccgagcgactatgcagaggacggc tggtcgccgtggtctgaatggacccattgttccgtgtcttgtgggcggggcatccagcag cgtgggcgctcttgcgaccgtatcaataacaactgcgagggcacctctgtgcagacccgc gactgctacctccaggagtgtgacaagcgattcaagcaagacggcagctggagccattgg tcaccctggtcatcctgctccgtcacctgcgatgctggtgtcatcacccgtatccgcctc tgcaactcccccacccctcagcttggaggcaaggactgtgagggagagggccggcaaacc gagaagtgtcagaaatctcagtgccccatcaatggcaactggggaccctggtccccgtgg gatacctgcactctcacctgtggaggtggtttccagactcgtaaacgcctgtgcaatgac ccagcaccaaaatacggtggcaaagagtgcgttggaaatgccaaagacacccagctgtgc aacaagaaagcctgtccaattgatgggtgcctgtctaacccctgctttgctggatccaag tgcaccagtttccctgatggttcctggaagtgtgggaagtgcccagctggctacactggc aatggtatcaagtgtaaagatgtggatgagtgcaaggaggtcccagacgcttgctttgag tttaagggtgtgcaccgctgtgagaacacagatcctggctacaactgtctgccctgccct cctcgctattcaggaccccaaccatttggcagaggagtggagcaggctgttgctaagaaa caggtatgcacacctcgcaatccctgccttgatggaagccatgactgcaacaaaaacgcc cgctgtaactacctcggacagtttgcggatcccatgtaccgctgcgagtgcaagcccggc tatgctggcaacggacatatctgtggagaggacacagatctggatggatggcccaacgct gacttggtttgtgtggagaatgccacataccattgcaaaaaggacaactgtcccaacctc cccaactctgggcaagaggattacgataaggacaacattggagatgcttgtgacaatgat gacgacaatgatggcattcctgacgatagggataactgtccattcgtgtacaaccccagg cagtatgactatgaccgcgacgatgtgggtgaccgctgtgacaactgcccctacaatagt aacccagaccaaacagacacagacagcaatggagagggagacgcctgcgctgttgacatt gatggagatggcatattaaacgagaaggacaactgcccctatgtgtacaatgtcgaccag agagacacagatctggacggagtgggagacatgtgtgataactgccctctagaacataat cctgatcaggtggattcagatgatgaccgagtgggagacaagtgtgacagcaaccaggac atcgatgaagacggacatcagaacaacctggacaactgcccatacatctccaatgccaac caggttgaccatgacaaggatggcaagggagacgcctgtgactatgatgacgacaacgac ggcatccctgatgacaaggacaattgcagactggccttcaaccctgaccaactggactct gatggtgatggccgtggagatgcttgcaagaatgactttgaccaagacaatgtgcccgac atctatgatgtgtgtcccgagaactttgacattagtgagacagactttcgcaagttccag atggttcctctggaccccaaaggcacctcgcagattgatcctaactgggttgtccgccat cagggcaaagagctggttcagactgtcaactgtgaccctggcatcgctgttggttaccac gaattcaattcagtggacttcagtgggactttcttcattaacacagagagggatgatgat tacgccggctttgtgttcggctaccagtccagttccaggttctatgtggtgatgtggaaa cagattacgcagacatactggtctaacaaacccaccaaagcccagggctactctggcctg tccatcaaagtggttaactccaccactggcccaggagagcacctgaggaacgccctgtgg cacacaggaaataccccaggacaggtccgcactctctggcacgaccccaagaacgttgga tggaaagacttcaccgcctacagatggcatctgatccacagaccgagaacaggacttatt agagtcgtgatgtatgagggcaagaagatcatggcagattctggtagcctctatgacaaa acatatgcaggcggcaggctaggtctttttgtcttctcacaagagatggtatacttttca gacctcaagtatgaatgcagagatgtctaa

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