Ectobacillus sp. JY-23: MUG87_14055
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Entry
MUG87_14055 CDS
T09162
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ecto
Ectobacillus sp. JY-23
Pathway
ecto03030
DNA replication
ecto03410
Base excision repair
ecto03420
Nucleotide excision repair
ecto03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MUG87_14055 (ligA)
03410 Base excision repair
MUG87_14055 (ligA)
03420 Nucleotide excision repair
MUG87_14055 (ligA)
03430 Mismatch repair
MUG87_14055 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecto03032
]
MUG87_14055 (ligA)
03400 DNA repair and recombination proteins [BR:
ecto03400
]
MUG87_14055 (ligA)
Enzymes [BR:
ecto01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MUG87_14055 (ligA)
DNA replication proteins [BR:
ecto03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MUG87_14055 (ligA)
DNA repair and recombination proteins [BR:
ecto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MUG87_14055 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MUG87_14055 (ligA)
MMR (mismatch excision repair)
DNA ligase
MUG87_14055 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MUG87_14055 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
HHH_3
PTCB-BRCT
RNA_pol_A_CTD
5_3_exonuc
HHH_8
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UOY91608
LinkDB
All DBs
Position
2722991..2724997
Genome browser
AA seq
668 aa
AA seq
DB search
MSSEIAQRIKELRDMLNKFNYEYHVLDKPSVSDAEYDKYMQELMRLEEEYPEFLTDDSPS
LRVGGQVLDVFTKVTHTSPMLSLGNAFNETDLRDFDRKVRQGSGREEIRYVCELKIDGLA
VSLRYENGLFVQGATRGDGVTGEDITQNLKTIKAIPLRLKESATMEARGEAYMPKRSFVK
LNEEKEEKGEVLFANPRNAAAGSLRQLDPKIAAQRNLSFFVYGLTNLEGQTISSHSEALN
YLDALGFKTNTHRRVCGSIEEVIAYVEEWQIKRPELDYEIDGIVIKVDDVTIQQQLGLTA
KSPRWAIAYKFPAEEVVTKLLDIELNVGRTGVVTPTANLEPVRVAGSIVRRASLHNEDLI
REKDIRIGDYVIIKKAGDIIPEVVSALVERRTGEEQEFRMPETCPECESDLVRLEGEVAL
RCLNPSCPAQIREGLIHFVSRDAMNIDGLGERVITQLFNEKLIHTVADIYKLEKEQLLGL
ERFGEKSASNLIAAIQASKNNSLEKLLFGLGIRHVGSKAARTLAQHFDNMENLRKASVEE
LTAINEIGDKMAESIVAYFDNEEVEELLQKLAEHGVNMIYKGVKPSEVVNSDSYFAGKTV
VLTGKLELMGRSEAKKKIEELGGKVTGSVSKSTDLLIAGEAAGSKLAQAEKHNVEVWNEE
RFVAELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtgagattgcacagcgcataaaagaactgcgcgatatgttaaataaatttaat
tatgagtatcatgttttggataagccttccgtttcagatgctgaatatgacaagtatatg
caagagttgatgcggttagaggaagagtatccggaatttttgacagacgattctccttcc
ttgcgtgtcggcggacaagtccttgatgtgtttacaaaagtgacacacacatcacccatg
cttagccttggcaatgcatttaatgagacagatttgcgtgattttgaccgaaaagttcgc
caaggtagcggacgcgaggagattcgttatgtttgcgaattgaaaatagatgggttagcg
gtatcccttcgttatgaaaacggtttgtttgtgcaaggtgctacccgcggcgacggagta
acaggtgaagatattacccaaaacctaaaaacgattaaagccatcccactgcgtttaaag
gaatctgctacaatggaagcgcgcggagaggcttatatgccaaagcgttcttttgtaaag
ctcaatgaagaaaaagaagaaaagggcgaagttttatttgcgaacccaagaaatgctgca
gctggttctctacgtcaattggatccaaaaattgcagcacagcgtaatttatcgttcttt
gtgtacggtttaacgaatttagaaggacaaactatttcatctcatagtgaggcattgaat
tatctcgatgcgcttggctttaaaacgaacacgcatcgtcgtgtttgcggcagtatagag
gaagtgattgcctatgtggaagagtggcaaattaagcgtccagagcttgactatgaaata
gacggtatcgtaatcaaagtagatgatgtgacgatacaacagcaattagggttaacagcg
aaaagtccaagatgggctatagcgtataagtttccagctgaagaggttgtgacaaaactg
cttgatattgagctaaatgtaggtcgtacaggcgttgttacaccaaccgcaaatctcgaa
cctgttcgtgttgctggttccattgtgcgccgcgcttcgcttcataacgaagatctaatt
cgtgaaaaagacattcgtatcggtgattatgtaatcatcaaaaaagccggagatattatt
cccgaggtcgtaagtgcattggtcgagcgtcgtacaggagaagagcaagagttccgtatg
ccagagacctgtccagaatgtgagagtgacttagtaaggttagaaggagaagtcgcgctt
cgttgtttaaatccatcttgtccagcgcaaatccgtgaagggttgattcattttgtatct
cgtgatgccatgaatattgatggtttgggagaacgcgtgattacacagcttttcaatgaa
aagttaattcatacggttgcggatatatacaaattggaaaaagaacagttgttggggctt
gagcgttttggcgaaaaatccgcatctaacttaattgcagctatccaagcttctaagaat
aactctcttgagaagttattgttcggattgggaattcgtcacgttggatcaaaggctgcc
cgcacactagcccagcattttgataacatggaaaacctgcgtaaggcaagcgtagaagaa
ttaacagctattaatgaaattggtgataaaatggcagagtctattgtcgcttattttgat
aatgaagaagtagaagaactgcttcaaaagcttgccgagcacggcgtaaatatgatatat
aaaggcgtaaaaccttcagaagtggtaaacagcgattcatattttgcaggtaaaacggtt
gtattaactggtaaactggagcttatgggacgaagtgaggcaaagaagaaaattgaagag
cttggcgggaaagtgactggaagtgtgagtaaaagtacagatttactaatcgcaggagaa
gcggctggttccaaattagcacaggctgaaaaacataacgtagaagtatggaatgaagag
aggtttgtggcggagttaaataagtaa
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integrated database retrieval system
