Escherichia coli APEC O1 (APEC): APECO1_2814
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Entry
APECO1_2814 CDS
T00425
Symbol
yicF
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ecv
Escherichia coli APEC O1 (APEC)
Pathway
ecv03030
DNA replication
ecv03410
Base excision repair
ecv03420
Nucleotide excision repair
ecv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ecv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
APECO1_2814 (yicF)
03410 Base excision repair
APECO1_2814 (yicF)
03420 Nucleotide excision repair
APECO1_2814 (yicF)
03430 Mismatch repair
APECO1_2814 (yicF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecv03032
]
APECO1_2814 (yicF)
03400 DNA repair and recombination proteins [BR:
ecv03400
]
APECO1_2814 (yicF)
Enzymes [BR:
ecv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
APECO1_2814 (yicF)
DNA replication proteins [BR:
ecv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
APECO1_2814 (yicF)
DNA repair and recombination proteins [BR:
ecv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
APECO1_2814 (yicF)
NER (nucleotide excision repair)
GGR (global genome repair) factors
APECO1_2814 (yicF)
MMR (mismatch excision repair)
DNA ligase
APECO1_2814 (yicF)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
APECO1_2814 (yicF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ABJ03118
UniProt:
A1AHH8
LinkDB
All DBs
Position
complement(4110816..4112504)
Genome browser
AA seq
562 aa
AA seq
DB search
MMMKVWMAILISILCWQSSAWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVED
GVYDQLSARLTQWQRCFGNETRDVMMPPLNGAVMHPVAHTGVRKMADKNALSLWMRERSD
LWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANSTLQ
GEIFLQREGHIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPHLMTDRLKD
LATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVRAAKEPESRHWLPGQAE
WLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWD
IAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLV
WLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFN
LARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQQPGTGSGRARQVIEWK
ENAQIKKLGSWLAAQQITGFEP
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
gtgatgatgaaagtatggatggcgatattaataagtatcttgtgctggcaatcatcggcg
tgggcggtctgtccggcctggtcgccagccagagcacaggaagaaatttcccgcctgcaa
cagcaaataaaacagtgggacgatgactactggaaggaagggaaaagtgaggtggaagac
ggtgtttacgatcagttaagcgcccgtctcacgcagtggcaacgctgttttgggaacgag
actcgcgatgtgatgatgccgcctttaaacggtgcggttatgcatccggttgcccatacg
ggtgtacgcaaaatggcggataaaaacgcattaagtctgtggatgcgcgaacgtagcgat
ctttgggtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgggacgggaaa
ctgaacaaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacgcagaaagtt
cgcttaatttccgctgtgccgcaaaccgttagcgggcctttagccaacagcacgcttcag
ggggaaatatttctccagcgcgaggggcatatccaacaacaaatggggggaataaatgcc
cgcgcaaaagttgctggcctgatgatgcgccaggggaatagcgatacgctaaactcactg
gctgtttttgtctgggcatggccggatggaccgcatttaatgaccgatcgtttaaaggat
ctggctaccgcaggttttactttaacgcagacgtatacccgcgcggttaaaaatgctgat
gaggttgcgcacgtacgcaatgagtggtggaaagcaaaattacccttcgtcaccgatggc
gtggttgtgcgagcggcgaaagaacccgaatcccgtcattggttaccgggccaggcggag
tggctggtggcctggaaatatcaacctgtagctcaggttgccgaagtgaaggcgattcag
tttgcggtgggtaagagcggtaaaatatcggtggtggcgtcactcgcacctgtcatgctg
gatgataaaaaagtccagcgggtgaatattggttccgtcaggcgctggcaggagtgggat
attgcgcctggtgatcagatcctcgtcagccttgccggtcaggggattcctcgcattgat
gatgtggtctggcgcggagcagaacgtacaaaaccgacaccaccagaaaaccgctttaac
tcgttgacctgctactttgcttctgatgtttgtcaggaacagttcatttcacgcttagtc
tggctggggtcaaaacaggttctggggcttgatggcattggtgaggccggctggcgcgcc
ctgcatcagactcatcgctttgagcatatcttttcctggcttttattaacgccagagcaa
ttacagaacacgccggggatcgcgaaaagtaaaagtgcgcagttatggcatcagtttaat
ctggctcgtcagcagccttttactcgctgggtgatggcaatgggaataccgctaacccgg
gcggcgcttaatgccagtgatgaacggtcctggtcgcaacttttatttagcacggaacag
ttctggcagcagcagccggggactggatcggggcgcgccagacaggttattgaatggaag
gaaaatgcgcaaatcaagaagctgggcagttggctggctgcccagcagatcacaggtttt
gaaccttag
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