Edaphobacter sp. 12200R-103: GWR55_17125
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Entry
GWR55_17125 CDS
T06408
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eda
Edaphobacter sp. 12200R-103
Pathway
eda03030
DNA replication
eda03410
Base excision repair
eda03420
Nucleotide excision repair
eda03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GWR55_17125 (ligA)
03410 Base excision repair
GWR55_17125 (ligA)
03420 Nucleotide excision repair
GWR55_17125 (ligA)
03430 Mismatch repair
GWR55_17125 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eda03032
]
GWR55_17125 (ligA)
03400 DNA repair and recombination proteins [BR:
eda03400
]
GWR55_17125 (ligA)
Enzymes [BR:
eda01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GWR55_17125 (ligA)
DNA replication proteins [BR:
eda03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GWR55_17125 (ligA)
DNA repair and recombination proteins [BR:
eda03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GWR55_17125 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GWR55_17125 (ligA)
MMR (mismatch excision repair)
DNA ligase
GWR55_17125 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GWR55_17125 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
5_3_exonuc
BRCT_2
HHH_3
zf-NADH-PPase
Bac_small_YrzI
Motif
Other DBs
NCBI-ProteinID:
QHS53243
UniProt:
A0A6B9YWM3
LinkDB
All DBs
Position
complement(4148490..4150595)
Genome browser
AA seq
701 aa
AA seq
DB search
MATAHTAEEQIEKLREEIRHHEYLYYMLDAPEISDAQYDALMNQLKKLEAEHPGLITPDS
PTQRVGGKPGGGFAKVAHSRPMLSLDNAYNAEELRAWDSRVRTGLSSSESVKYVCELKLD
GLSMALQYTAAQDGSARLQRGLTRGDGTTGEDVTTNVRTIRSVPLSVSAKKLAAAKLPQD
FEVRGEVVLPHVAFVKMNEERVAQGMAPAANPRNAAAGTIRTLEPNIVAQRRLDLYAYFL
LRDGETLLPTHTETLEALRTAGFRVNPHAKTVKNIDGVIEFIAAAEPLRETLGYEIDGVV
IKVDSTAQQRRLGFTGKAPRWAIAYKFAARAAVTKLEDVHFQVGRTGKVTPVAVLVPVLI
GGTTVTRATLHNADEIARLGVKIGDSVQVERGGDVIPKIVEVVEDKQHPRGNKEIVFPST
CPVCGTELVRVEGEVDWRCINNSCPARVREELLHWASRGVMNIEGLGDAMVAQLLGQAPT
FDGETAEVTEEGAPITTRKPLIYNIADLYRLKREQLLGLERVGEKTADALLAQIDRSCSA
GLARVLLGLGIRFVGERTAQLLAQHFGSIEALKKATAEELEAVNEVGPKVAQAIVEFFAI
EKNQQLISDLESLGLKMTAEKKVVGTALNGLTFVLTGTLPNLTRDEAKERIEAAGGKVSG
SVSKKTSFVVAGEEAGSKLEKAQSLGVKILDEEGLLELLKG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgcccatacggctgaagaacagatcgagaagctgcgcgaagagattcggcac
cacgagtatctctattacatgcttgacgcgcccgagatcagcgacgcgcagtacgacgcg
ctgatgaaccagctcaaaaagctggaggcggagcaccccggcctcatcacccccgactcc
cccacgcagcgcgtcggcggcaagccgggcgggggcttcgccaaggtggcccattcgcgg
cccatgctctcgctggacaacgcctacaacgcggaggaactgcgcgcctgggatagcagg
gtccgcaccggtctctcctcctcagagagcgtgaaatacgtctgcgaattgaagctcgat
ggcctgtcgatggcattgcagtacaccgccgcacaggacggctccgcccgtctgcagcgc
ggcctcacgcgcggcgatggaaccaccggagaagatgtcaccaccaatgtgcggaccatc
cgctcggttccgctgagcgtaagcgccaaaaaactcgccgccgccaagctgccgcaggac
ttcgaggtgcgcggcgaggtggtgcttccccacgtcgccttcgtcaaaatgaacgaagag
cgcgtcgcccaggggatggctcccgctgccaatccgcgaaacgccgccgccggcacgatc
cgcaccctcgaaccgaacatcgtcgcgcaacgccggctcgatctctacgcctacttcctc
ctccgtgacggtgagacgctgctccccactcacaccgaaacccttgaggcgctccggact
gcgggatttcgcgtcaatccacacgcgaagacggtaaagaacatcgatggagtaattgaa
tttatcgccgcagccgagccgctccgcgagaccctgggatatgagatcgacggcgtcgtc
atcaaggtggactccaccgcgcagcagcgccgcctgggatttaccggcaaggctccgcgc
tgggccatcgcctacaaattcgccgcccgcgccgcagtgacaaagctcgaagacgtccac
tttcaggtcggacgcaccggcaaggtcacccctgtagccgttctggtcccggtcctgatc
ggagggaccacagtcacccgcgccaccctgcacaacgccgacgagatcgcccggctcggc
gtgaagatcggtgactccgtccaggtcgaacgcggcggcgatgtcatccccaagatcgtc
gaagtcgtcgaggacaagcagcatccacgcgggaacaaggagatcgtcttcccatctacc
tgcccggtctgcggtacggagttggtacgcgtcgaaggcgaagtggactggcgctgcatc
aataactcctgcccggcccgcgttcgcgaagagcttctgcactgggcctcccgtggcgta
atgaatatcgaaggcctgggcgacgcgatggtcgcgcagctgctgggacaggctcccacc
ttcgatggggagaccgcagaggtcaccgaagagggcgctcccatcaccacccgtaaaccc
cttatttacaacatcgcggacctctaccgcctgaagcgcgagcagcttctgggattggag
cgtgttggcgaaaagaccgccgatgccctgctggcccagatcgaccgctcctgcagcgct
ggcctcgcgcgtgtgttgctggggttgggaattcgttttgtcggagagcgcacggcccag
ttgctggcccagcacttcggttccatcgaggcgctgaagaaggccacagccgaggagttg
gaggccgtcaacgaggtcggccccaaggtcgcgcaggccatcgtggagttttttgcaatc
gagaagaatcagcaacttataagtgatcttgagtcgctcgggctcaagatgactgccgaa
aagaaagtagtaggaactgcgctcaacggcctcaccttcgtgctgaccggaacgctgccg
aacctgacccgcgacgaagctaaagagcggatcgaggccgctggcggcaaggtatctggc
agtgtgagcaaaaagacgagctttgttgtggcgggtgaagaggcgggctcgaagcttgaa
aaagcgcagtcgcttggggtgaagattctggatgaggaagggcttctggagctgctgaag
ggataa
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