Edaphobacter albus: H7846_03055
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Entry
H7846_03055 CDS
T08591
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
edg
Edaphobacter albus
Pathway
edg03030
DNA replication
edg03410
Base excision repair
edg03420
Nucleotide excision repair
edg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
edg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H7846_03055 (ligA)
03410 Base excision repair
H7846_03055 (ligA)
03420 Nucleotide excision repair
H7846_03055 (ligA)
03430 Mismatch repair
H7846_03055 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
edg03032
]
H7846_03055 (ligA)
03400 DNA repair and recombination proteins [BR:
edg03400
]
H7846_03055 (ligA)
Enzymes [BR:
edg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H7846_03055 (ligA)
DNA replication proteins [BR:
edg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H7846_03055 (ligA)
DNA repair and recombination proteins [BR:
edg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H7846_03055 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H7846_03055 (ligA)
MMR (mismatch excision repair)
DNA ligase
H7846_03055 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H7846_03055 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QNI37310
LinkDB
All DBs
Position
complement(737183..739288)
Genome browser
AA seq
701 aa
AA seq
DB search
MAHVPTAEEQIQSLREEIHHHEHLYYVLDSPEITDAQYDALMNRLKKLEEQHPELITPDS
PTQRVGGKPREGFAKVAHSRPMLSLDNAYNEEELRAWDQRVRAGLPSSETLRYVCELKLD
GLSLALQYGAGAHESAHLERGLTRGDGTTGEDVTTNVRTIRSVPLSVAAKKLHTAHLPQS
FEVRGEVVLPQAAFVKMNEERVAQGLAPAANPRNAAAGTIRTLEPNIVAQRRLDFYAYFL
LRDGETLLPTHTETLEALKTAGFRVNPHGATAKNIDQVIEFIAKAEPLRETLGYEIDGVV
IKVDSTAQQRRLGFTGKAPRWAIAYKFAARAGITKLEDVLFQVGRTGKVTPVAALTPVLI
GGTTVTRATLHNADEIERLGVRIGDFVQVERGGDVIPKIVSVIDDKEHPRGKKEIVFPSV
CPVCGSELMKVEGEVDWRCVNSSCPARVREELLHWSARSVMNIEGLGDAMVAQLLGQNPT
FDEGTEAVTEEGAPITTRKPLIHTIADLYRLKREQLLGLERVGEKTADALLAEIERSKAA
GLARALLGLGIRFVGERTGQLLAQHFGSMKALREASAEELEAVNEVGPKVAQAIVEFFAV
EKNLQLIDDLESLGLKMTAEKRVVGTTLEGLTFVLTGTLPNLTRDEAKEKIEAAGGKVSG
SVSKKTDYVVAGEEAGSKLEKAQALGVKVVDEVGLLKLLNG
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggctcacgtacccacagctgaagaacagattcagtcgctgcgcgaagagattcaccac
catgagcatctttactacgttctggactctcctgagatcaccgatgcgcagtacgacgca
ctgatgaaccggttgaagaagctggaggaacaacatcctgagctgattaccccggactct
cctacgcaacgagtgggcggcaagccgcgtgagggcttcgccaaggttgcgcactcacgg
ccaatgctctcgctcgataacgcttataacgaagaagagctacgagcatgggatcagcgc
gttcgagccggcctgccgtcttcagaaactctgcgttatgtttgcgaactaaagttagat
ggcctctccctggctctgcaatacggcgcaggcgcgcatgaatcggcgcatctggagcgc
ggcctgactcggggtgacggcacgacgggcgaggatgtgacgacgaatgtcagaaccatc
cgttcggtgccgctgagtgttgcagcaaagaagctccatactgcacatctgccccaaagc
ttcgaggtgcgtggcgaagtcgtgctgccgcaggcggccttcgtcaaaatgaacgaggag
cgtgttgctcaggggcttgctcctgcagcaaatccacgtaacgctgctgcagggacgatt
cgcacactggaaccgaacattgtggcgcaacgtcggctcgatttctacgcctatttcctg
ttgcgggatggagagactctgcttccgacgcatactgaaacgctggaggcattgaagaca
gctggctttcgcgtgaacccgcatggggcgacggcaaagaacatcgatcaggtgattgag
ttcatcgccaaagcggagccgttgcgcgagacgctcggatacgagatcgatggcgttgtg
atcaaggtggattccactgcacagcagcgtcgtttgggatttacgggcaaggctcctcgc
tgggcgatcgcctataagttcgcggcacgagcaggaatcaccaagctcgaagacgtgctc
tttcaggtaggaagaacgggcaaggttactcctgttgctgcgctgactccggtgttgatt
ggaggcacgactgtcacacgcgccacgctccacaatgctgatgagatcgaaaggctcggc
gtcaggattggggacttcgtgcaggtggagcgcggcggggacgttatccccaagatcgtc
tcggtcatagacgacaaagagcatccacgcggaaagaaggaaatagtcttcccctccgta
tgtccggtttgcggaagcgagctgatgaaggttgagggcgaggtggactggcgatgcgtt
aacagttcttgcccagcgcgtgttcgagaggagctgttgcactggtctgcacggagtgtg
atgaacatcgaggggctcggcgatgccatggtggcacagcttctggggcagaacccgact
ttcgatgaaggtacggaagctgtgaccgaagagggtgcaccgattacgacgcgcaagccg
ctgatccacactattgcggacctgtatcgcctgaagcgcgagcagcttctgggattggag
cgcgtcggcgagaagactgccgatgccctgctggctgagatcgagcgatccaaagcagct
ggtctggcccgcgctctgttggggcttgggattcggtttgtcggtgagcgtacaggacag
ctgctggcgcagcacttcggctcgatgaaggccctgcgcgaggcttcggcagaggaattg
gaggctgtcaatgaagttggccccaaggtcgcccaggccatcgtggagttcttcgctgta
gaaaagaaccttcaactcatcgacgatctggaatcacttggtttgaagatgacagccgaa
aagcgcgtcgtcggcacgacactggaagggctgacctttgtgctgactggaaccctgcca
aaccttactcgggatgaagcaaaagaaaagattgaagctgcgggcggaaaggtttcagga
agcgtcagtaaaaagacggactacgttgtcgcgggagaagaggccggctcaaaactcgag
aaggcacaagcacttggggtgaaggtggtggacgaggtaggtcttctgaaactgctgaat
ggctaa
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