Enterococcus durans: LIU_09390
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Entry
LIU_09390 CDS
T04048
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
edu
Enterococcus durans
Pathway
edu03030
DNA replication
edu03410
Base excision repair
edu03420
Nucleotide excision repair
edu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
edu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LIU_09390 (ligA)
03410 Base excision repair
LIU_09390 (ligA)
03420 Nucleotide excision repair
LIU_09390 (ligA)
03430 Mismatch repair
LIU_09390 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
edu03032
]
LIU_09390 (ligA)
03400 DNA repair and recombination proteins [BR:
edu03400
]
LIU_09390 (ligA)
Enzymes [BR:
edu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LIU_09390 (ligA)
DNA replication proteins [BR:
edu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LIU_09390 (ligA)
DNA repair and recombination proteins [BR:
edu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LIU_09390 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LIU_09390 (ligA)
MMR (mismatch excision repair)
DNA ligase
LIU_09390 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LIU_09390 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
DUF3783
Motif
Other DBs
NCBI-ProteinID:
AKZ48579
LinkDB
All DBs
Position
complement(1983843..1985879)
Genome browser
AA seq
678 aa
AA seq
DB search
MEHEMTIDEAAKRAEELRTQLSQWSKQYYVEDKPTVEDYVYDKAYAQLVAIEEQYPDLIT
SDSPTQRVGGKVLTGFEKVTHDIPLYSLNDVFSKEELFAFDQRVQKAIGHPVDYCCELKI
DGLSVSLRYENGEFVRGATRGDGTVGENITENLKTVRSVPLELKNQISIEVRGECFMPKK
SFIQLNKSREVEGQDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPMKAKTQY
EALEELDKIGFHINQEKRLCHSIEDVWSFIEEYHEKRVDLPYEIDGIVIKVNDFALQDQL
GFTVKAPRWAAAYKFPPEEVETKIEAIEWTVGRTGVVTPTAIMTPVRVAGTTVSRASLHN
GDYIKMKDIRLNDTVQIYKAGDIIPEVAQVVFEKRPDDSEEYPLPSHCPVCQSELVHLDE
EVALRCINPKCPAQIKEGLNHFVSRNAMNIDGLGPRVLAQMYDKKLVSDVADLYNLTEEQ
LLTLDKIKEKSANNILTAIDNSKENSVERLIFGLGIRHVGAKAAKILAEHFGDLESLSKS
DFETIISLDTIGDIIADSVVTYFSNEEVHDLLAELKQAGVNFDYKGIRPAQITTIDSPFK
DKTVVLTGKLTRFTREEAKETIENLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQELGIDV
WTEEEMAEALAESRTNPE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggaacacgaaatgacgatagacgaagccgctaaaagagcggaggagttgagaacccaa
ttaagtcagtggtctaaacagtattatgtcgaagataaaccaacagtcgaagattacgtg
tatgacaaagcatatgcgcaattagtggcaattgaagaacagtatcccgatttgatcaca
tcagattctcctacgcaacgcgtaggagggaaggtccttacaggattcgaaaaagtcact
cacgatattccattgtatagtttgaacgatgtatttagtaaagaagaactctttgctttt
gatcagcgtgtccaaaaagcgattgggcatccagttgattattgttgtgaattgaagatc
gatgggctgtctgtttctttgcgctatgaaaatggtgaatttgtcagaggtgctacacga
ggagatggaactgtcggcgagaacatcactgaaaatctgaagacagtgcgatccgtacct
ttggaactaaaaaatcagatcagtatcgaagtccgtggcgaatgctttatgccgaaaaag
tcatttattcaattgaacaaatcgagggaagttgaagggcaagatatctttgcaaatcca
cgtaatgcagctgcaggttctttgcgacagcttgattctaaaataacagctaaaagaaat
ctggatacctttttgtacacagtagcagattttggtccaatgaaagcaaagacccagtat
gaagcgctagaagaattagacaaaatcggcttccacatcaatcaggaaaaacgcttgtgc
cattcgattgaggatgtatggtcatttatcgaagaataccatgaaaaacgggtagatctt
ccttatgagatcgatggtatcgtcatcaaagtcaacgattttgctttgcaagatcaatta
ggatttactgtaaaagcaccgcgttgggccgcagcgtacaaatttccacctgaagaggta
gaaaccaaaatcgaagcaatcgaatggacagtagggcgcaccggcgttgtcacacctact
gcgatcatgactcctgtccgtgtggctggtacgacagtcagtcgagcaagtctgcacaat
ggcgattacatcaaaatgaaggacatccgcttgaacgataccgttcaaatctacaaagct
ggcgatattattccagaagtcgctcaggtagtatttgagaagcgaccagatgacagtgaa
gagtatccgttaccatcacattgtccagtctgtcaaagtgagctcgtgcatttagatgaa
gaagtcgctttgcggtgtatcaatccgaaatgtccggctcaaataaaagaaggactcaat
cattttgtctctcgtaatgcaatgaatatcgatggactaggaccaagagttttagcacaa
atgtacgacaaaaaattggtgtctgatgtagctgatctctataacttgaccgaagaacaa
ttattgactttggataaaatcaaagaaaaatccgcaaacaatattttaactgcaatcgac
aacagtaaagaaaattcagtggaacgcttgatctttgggctaggaatccgtcatgtaggc
gcaaaagctgcaaaaatcttagcagaacatttcggtgatttggagagcttgagcaaaagc
gattttgaaacgatcatttctttagatacgattggtgatatcatcgcagacagcgtagtt
acctactttagtaatgaagaggtccatgatctattagctgaactgaaacaagcgggagtc
aattttgactacaaagggattcgtccagcacaaatcacaacgatcgattcaccatttaaa
gacaaaacagttgtgttaactggtaaactgacgcgattcactcgagaagaagcaaaagag
acgatcgagaatctaggcggaaaagtaaccggaagtgtctcgaaaaaaacagatatcgtc
gtggctggtgaagaggctggaagcaaactgacgaaagcacaagaattagggatcgacgtt
tggacagaagaagaaatggcagaggcgttagctgaaagtcggacaaatccagagtga
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integrated database retrieval system
