Enterobacter dykesii: F0320_15565
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Entry
F0320_15565 CDS
T10162
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
edy Enterobacter dykesii
Pathway
edy03030
DNA replication
edy03410
Base excision repair
edy03420
Nucleotide excision repair
edy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
edy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F0320_15565 (ligA)
03410 Base excision repair
F0320_15565 (ligA)
03420 Nucleotide excision repair
F0320_15565 (ligA)
03430 Mismatch repair
F0320_15565 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
edy03032
]
F0320_15565 (ligA)
03400 DNA repair and recombination proteins [BR:
edy03400
]
F0320_15565 (ligA)
Enzymes [BR:
edy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F0320_15565 (ligA)
DNA replication proteins [BR:
edy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F0320_15565 (ligA)
DNA repair and recombination proteins [BR:
edy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F0320_15565 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F0320_15565 (ligA)
MMR (mismatch excision repair)
DNA ligase
F0320_15565 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F0320_15565 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Prok-E2_C
DZR_2
DUF2229
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
XBN38728
UniProt:
A0AAU7IYB2
LinkDB
All DBs
Position
complement(3267760..3269775)
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDSLTWCCELKLDGLA
VSLLYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLQGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVESERPADTREIVFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEK
ASIDELQKVPDVGIVVATHVFNFFAEESNREVIGKLLEEGIKWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaactcactgaactgcgaaccacgcttcgccatcatgaatat
ctctatcatgttatggacgcgccggaagtcccggatgccgaatatgaccgcctgatgcgc
gagctgcgcgaactagaggcgcagcatccggagcttatcacgccggattcccccacccag
cgcgtcggcgctgagccgctgggcgctttcagccaggtgcgccatgaggtgccgatgctg
tcgctggataacgtcttcgatgaagagagcttcctcgcgtttaacaagcgcgtgcaggat
cgcctaaaaagcagcgactccctcacctggtgctgcgagctcaagctggatggcctggcg
gtcagccttctctatgaaaacggcgtgctggtgcgtgccgcaacgcgtggcgacggtacg
acgggcgaagacatcactaccaacgtgcgtaccatccgtgcgatcccgctgaagctgcag
ggtgacaacattcccgcgcgtctggaagtgcgcggcgaggtgttcctgccccaggcgggc
ttcgagaaaattaacgaagaggcgcgtcgcacgggcggtaaggtgtttgctaacccgcgt
aatgcggcggcaggctctctgcgccagcttgacccgcgtattacagcgaagcgaccgctt
actttcttctgctacggcgtcggtattctggagggcggcgagctgccggatacgcacctg
ggacgtctgctgcagtttaaagcgtggggcctgccggtgagcaaccgcgttcagctctgc
gactcgccggaagcggtgctggcgttctaccacaaggtggaagaggaccgtcctacgctc
ggttttgatatagatggcgtcgtcatcaaggtgaattcactggcgctgcaggagcagctg
ggctttgttgctcgcgcgccgcgctgggcggtggcgtttaagttccctgctcaggagcag
atgaccttcgttcgcgatgtggagttccaggttggccgtacgggggcgattaccccggtc
gcccgtctggagcccgtgcaggttgcgggcgtgctggtgagtaacgccacgctgcataac
gccgatgaaatcgaacgtctgggcttgcgtattggtgacaaagtggtgattcgccgggcg
ggcgacgttatcccgcaggtggttaacgtcgtggagtcagaacgtcctgccgatacgcgc
gagatcgtcttcccgacccactgcccggtgtgcggctccgacgttgagcgtgtggaaggt
gaagcggtggcgcgctgtacggggggcttaatctgtggtgcgcagcgtaaagaatcgctg
aagcatttcgtctcccgtcgggcgatggacgtcgacggcatgggcgacaagattatcgat
cagctggttgagaaagagtatgtccacacgccagcggatctcttcagactgacggcaggt
aaactgaccggcctggatcgcatggggccaaagtcagcccagaatgtggttaacgcgctg
gaagccgccaaagagacgacctttgcccgcttcctgtatgcgctgggcattcgtgaagtg
ggtgaggcgacggcggcgggcctggcggcgtactttggtacgctggaggcgctggaaaag
gcaagcatcgacgagctgcagaaagtccctgacgttggcattgtagtcgccacgcacgtc
tttaacttcttcgccgaagagagcaaccgtgaagtcatcggcaagctgctggaagagggc
atcaagtggcccgcgccggtggtggttaacgccgaagagatcgacagcccgttcgccggt
aaaacggtggtcctgaccggcagcctgagccagctttcacgcgacgatgcgaaagcgcgc
ctggtggcgctgggggccaaagtggcgggcagcgtgtcgaagaaaaccgacctggtgatc
gccggggaagcggcgggctctaagctggcgaaagcccaggagctcggcattgatgttatc
gacgaagcggaaatgatgcgtctgttaggagagtaa
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integrated database retrieval system
