Enterobacter ludwigii EcWSU1: EcWSU1_00093
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Entry
EcWSU1_00093 CDS
T01652
Symbol
ligB
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eec
Enterobacter ludwigii EcWSU1
Pathway
eec03030
DNA replication
eec03410
Base excision repair
eec03420
Nucleotide excision repair
eec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EcWSU1_00093 (ligB)
03410 Base excision repair
EcWSU1_00093 (ligB)
03420 Nucleotide excision repair
EcWSU1_00093 (ligB)
03430 Mismatch repair
EcWSU1_00093 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eec03032
]
EcWSU1_00093 (ligB)
03400 DNA repair and recombination proteins [BR:
eec03400
]
EcWSU1_00093 (ligB)
Enzymes [BR:
eec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EcWSU1_00093 (ligB)
DNA replication proteins [BR:
eec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EcWSU1_00093 (ligB)
DNA repair and recombination proteins [BR:
eec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EcWSU1_00093 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EcWSU1_00093 (ligB)
MMR (mismatch excision repair)
DNA ligase
EcWSU1_00093 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EcWSU1_00093 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
DUF3701
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AEW71533
UniProt:
G8LFP8
LinkDB
All DBs
Position
92788..94464
Genome browser
AA seq
558 aa
AA seq
DB search
MAMWRWMSGLMLLWCGYGAAVCPVWSQAKAEKEIATLSAQVKRWDDAYWKQGVSEVNDDV
YDQLNGRLKQWQRCFGDIPSEEALPVLTGSVRHPVAHTGVHKAGSKEELRQWMRGRDTLW
MQPKVDGVAVTLVYRDGKLTQAISRGDGLKGEDWTAQVYLIPAVPKKVTGALANSVLQGE
LFWLRDNHLQRQMGGMNARAKVAGAMMRQKDNPLLSQTGIFIWALPDGPKVMSSALSELS
KAGFSLTARYTLPVQTVDAVEKQRSTWHNTALPFATDGIVVRSADAPPGENWLPGEGSWV
VAWKYPPVAQIAEVRDIHFAVGRTGKISVVAALVPVLLDDKQVQRVSLGSVERWQRLDIA
TGDQIQVSLAGQGIPRFDKVVWRGEERQKPTPPASHYHAQSCFYASPACMEQFFARLTWL
SSKHVLNIEGVGESGWRALHQAHHFEYIFSWLTLTQAQLQSTPGFSAARGQALWHRFNLV
RERPFIRWIMALGVPLTQASLNAMGDLTWQKMRERNAADWQALPGTGKEKARQLVAFIHD
PGIAGLVAWLGKQGVQGF
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
gtggcgatgtggcgatggatgagcggattaatgctgttgtggtgcggctacggtgcggcg
gtgtgtcccgtgtggtctcaggcaaaagcagagaaagagattgcgacgttgagtgcgcaa
gtcaaacgctgggatgatgcctactggaagcagggcgtgagcgaggtgaatgacgacgtc
tatgaccagctcaatggccgtttaaagcagtggcagcgctgcttcggcgatataccttct
gaggaggccttaccggttctaacggggagcgtaagacatcctgttgcccatacgggagtg
cataaagcgggcagtaaagaagagctacgccagtggatgcgtggtcgtgacactctctgg
atgcagccaaaagtcgacggggtggcagtgacgctggtgtatcgcgacggaaagttaacc
caggctatcagtcgtggtgatgggctaaaaggtgaggactggactgcacaagtgtattta
attcccgcagtgcccaaaaaagtgaccggtgcgctggccaacagcgtcttacagggggag
cttttttggttacgtgacaaccatcttcagcgacagatggggggaatgaacgcacgggca
aaagtggcgggcgcgatgatgcggcaaaaggacaatccgcttctgagccagacagggata
tttatctgggccttgccggatgggccgaaagtgatgtcgagtgcgctgtctgagttatct
aaagccggcttttccctgacggcgcgttataccctgcctgtacagactgttgatgctgtc
gagaaacagcgctcgacgtggcacaacacggcattaccctttgccacggacggcattgtg
gtgcggtccgcggatgcccctcccggcgaaaactggttgcccggagaaggcagctgggtc
gtcgcatggaaatatcccccggtcgcacagatcgccgaagtaagagatattcattttgcc
gtggggcgcacgggaaaaatctcagtcgtggcggcgctggtccctgtcctgctggatgat
aagcaggtacaacgggtcagtcttgggtccgttgaacgctggcaaaggctggatattgcg
acgggtgatcagatacaggtcagtctggccgggcagggtatcccgcggttcgataaggtg
gtctggcggggggaagagagacaaaagcccacacccccggcctcgcattatcatgcgcag
agctgtttttacgcctcgccggcgtgtatggagcagttctttgcccgcctgacgtggctt
agttcaaagcacgtgctgaatattgaaggagtcggtgagtcaggctggcgggcgctgcat
caggcgcatcattttgaatatatcttctcatggctgacattaacgcaggcgcagctgcag
tctaccccggggttttccgcagcacgcgggcaggcgctctggcatcgctttaatctggta
cgggagcgaccctttattcgttggatcatggcattgggtgttccgctgacgcaggcctcg
ctaaacgctatgggagacctgacgtggcagaaaatgcgtgagcgtaacgcagcagactgg
caggcacttcccggcacaggaaaggagaaagcccggcagctcgttgcgtttattcatgat
cctggcattgccggcctggttgcctggctcggcaagcagggagtgcaaggattctga
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