Enterobacter ludwigii EcWSU1: EcWSU1_03246
Help
Entry
EcWSU1_03246 CDS
T01652
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eec
Enterobacter ludwigii EcWSU1
Pathway
eec03030
DNA replication
eec03410
Base excision repair
eec03420
Nucleotide excision repair
eec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EcWSU1_03246 (ligA)
03410 Base excision repair
EcWSU1_03246 (ligA)
03420 Nucleotide excision repair
EcWSU1_03246 (ligA)
03430 Mismatch repair
EcWSU1_03246 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eec03032
]
EcWSU1_03246 (ligA)
03400 DNA repair and recombination proteins [BR:
eec03400
]
EcWSU1_03246 (ligA)
Enzymes [BR:
eec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EcWSU1_03246 (ligA)
DNA replication proteins [BR:
eec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EcWSU1_03246 (ligA)
DNA repair and recombination proteins [BR:
eec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EcWSU1_03246 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EcWSU1_03246 (ligA)
MMR (mismatch excision repair)
DNA ligase
EcWSU1_03246 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EcWSU1_03246 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Prok-E2_C
DZR_2
DUF2229
Motif
Other DBs
NCBI-ProteinID:
AEW74674
UniProt:
G8LLP1
LinkDB
All DBs
Position
complement(3378179..3380194)
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDSLTWCCELKLDGLA
VSLLYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLQGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVESERPDDTRAIVFPTHCPVCGSDVERVEG
EAVARCTGGLICVAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLDRMGPKSAQNVVNALDAAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEK
ASIDELQRVPDVGIVVATHVFNFFAEESNREVIGKLLEEGIRWPAPVVVNADEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaactcactgaactgcgaaccacgcttcgccatcatgaatac
ctctatcatgttatggacgcgccggaagtgccggatgcggagtatgaccgtctgatgcgc
gagctgcgcgagctagaggcgcagcacccggaattgattacgcccgactcacccacgcag
cgcgtgggcgcggaaccgctgggtgctttcagtcaggtacgtcatgaagtcccaatgttg
tctctggataacgtctttgatgaagagagcttcctcgcgtttaacaagcgcgtgcaggat
cgcctcaaaagcagcgactccctgacctggtgctgcgagttgaagctggatggtctggcg
gtcagccttctctatgaaaacggtgtgctggtgcgtgccgcgacgcggggtgatggtacg
acgggtgaagacattaccaccaacgtacgcaccatccgtgcgatcccgctgaagctgcaa
ggggataatattccagcccgactggaagtgcgcggtgaggtattcctcccgcaggcgggc
ttcgagaaaatcaacgaagaggcgcgccgtaccggcgggaaagtgtttgctaacccgcgt
aatgcggcggcaggctccctgcgccagcttgatccccgtatcaccgcgaagcgaccgctt
actttcttctgctatggcgtcgggattctggaaggcggtgaactgccggatacccatctc
ggacgtttattgcagtttaaagcgtggggcctgccggtgagtaaccgtgttcagctgtgc
gactccccggaagccgtgctggcgttctaccacaaagtggaagaagaccgcccgacgctt
ggttttgatattgatggcgtggttatcaaggttaactcacttgcgctgcaggagcagtta
ggctttgtggcgcgcgcgccacgctgggcagtggcgtttaaattcccggcgcaggagcag
atgacctttgtccgtgacgtggagttccaggtgggccgtacgggcgcgattaccccggtt
gcccgtctggagccggtgcaggttgccggcgtgctggtgagtaacgccacgctgcataac
gccgatgaaattgaacgtctcggcctgcgcattggtgacaaagtggtgattcgtcgcgcg
ggcgatgttatcccgcaggtggtgaacgtggttgagtcagagcgtcctgacgatacgcgc
gctatcgtgttcccgacgcattgcccggtatgcggatctgacgttgagcgcgttgaaggt
gaagcggtggctcgctgtacgggtggcttaatctgcgtggcacaacgtaaagagtcactg
aagcacttcgtttcccgtcgggcgatggacgtcgacggaatgggcgacaaaattatcgat
cagctggtagagaaagaatatgttcatacgcctgcagatctctttaaactgaccgcgggt
aaactcacgggtcttgatcgcatgggaccgaagtcggcccagaatgtggttaatgccctg
gatgctgccaaagagacaacctttgcccgattcctttatgcgctcggtattcgcgaagtg
ggcgaagccacagcggcggggctggcggcgtatttcggtacgctggaagctctggaaaaa
gcgagtattgacgagctgcagagagtcccggacgtggggattgtcgtcgcgacgcatgtc
tttaacttctttgccgaagagagcaaccgcgaggtgatcggcaagctgctggaagagggc
atcagatggccggctccggtcgtggtcaacgctgacgagatcgacagcccgtttgccggc
aaaacggtcgtgctgaccggcagcctgagccagctttcacgtgatgatgctaaagcgcga
ctggttgcgctgggcgcaaaagtggcaggcagcgtgtcgaagaaaaccgacctggttatt
gccggggaagccgccggttcgaagcttgctaaagctcaggagctgggcattgaggttatc
gacgaagcggaaatgatgcgcctgttaggagagtaa
DBGET
integrated database retrieval system
