Eikenella exigua: EZJ17_02505
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Entry
EZJ17_02505 CDS
T06211
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eex
Eikenella exigua
Pathway
eex03030
DNA replication
eex03410
Base excision repair
eex03420
Nucleotide excision repair
eex03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EZJ17_02505 (ligA)
03410 Base excision repair
EZJ17_02505 (ligA)
03420 Nucleotide excision repair
EZJ17_02505 (ligA)
03430 Mismatch repair
EZJ17_02505 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eex03032
]
EZJ17_02505 (ligA)
03400 DNA repair and recombination proteins [BR:
eex03400
]
EZJ17_02505 (ligA)
Enzymes [BR:
eex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EZJ17_02505 (ligA)
DNA replication proteins [BR:
eex03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EZJ17_02505 (ligA)
DNA repair and recombination proteins [BR:
eex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EZJ17_02505 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EZJ17_02505 (ligA)
MMR (mismatch excision repair)
DNA ligase
EZJ17_02505 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EZJ17_02505 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DUF1706
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
BRCT_2
DinB_2
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QED91635
UniProt:
A0AAX1F6V6
LinkDB
All DBs
Position
complement(472954..475896)
Genome browser
AA seq
980 aa
AA seq
DB search
MTAQQRIRTLVQTLNRYAHEYYTLDAPSVPDAEYDRLYRELEALEAEYPQFRLPESPTQR
VGGAVLDGFETVVHAVPMLSLNNAFSPRDDETGAFDHAEFLAFDERVCKELGVSQVEYAA
EPKFDGLAVSLLYQNGILVQAATRGDGTTGENVTENIKTVRNIPLKLHGEKQPALLEVRG
EVLMLKADFAALNQRQLEAGQKPFANPRNAAAGSLRQLDSKITAQRKLHFFAYGIAQLSG
AERLPESHMEELALLHELGFSLPEGYFGAYTGAAAVLREYERLAEHRPRLPYEIDGMVVK
VNSLAEQQQLGFVSRAPRWAIAHKFPAEEALTAVEAIDVQVGRTGAITPVARLAPVFVGG
VTVTNATLHNQDEVARKDVRVGDTVIVRRAGDVIPEVVRVLLERRPMQPVDLLGEQMEAK
YEPFKLPETCPVCGSAVERETGEAVARCTGGMLCQAQRAQGLIHFASRKAMDIAGLGDKQ
IEALVAADVLHSFADIYQLDIAQLQTIKDSKSAATKWAQNILDSIAQSRTPPLARFLFAL
GIRHVGESTAKQLAAAFGNLDIVRRAPEPILACLPDIGSVVAHAIAHYFRQPAQQKMLDD
LLQHVAPQAAAPSPQTRAHAAPEQWLQRLPNIKLSEKRAAELWQLAGSLHALQTDQALPQ
EWQDWRRQPAHAALLQDIIAFTEGLPESSSDDVSGSLHPENSPIAGKTFVLTGTLPTLKR
DQAAALIEAAGGKVSGSVSKKTDFVVAGEAAGSKLEKAQALGVAVLSEEELLGMLGGSGL
KGCLETCSLICNPLGRMMVWLGDNPNCMPASQHKDSSMKTYANAAELITAIHTALDKYLA
EFSDIAEADKHRRAVPDGKTPAEHLAYQLGWTSLLLQWERDEQAGQTVHTPAEGYKWNDL
GGLYQQFYQQYSSLTLQEAQAQLRGQVAQICEWLETLSEQELFGSNQRRWADNQAKWPIW
KWVHINTVAPFTNFRTHIRK
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcccaacaacgcatccgcaccctcgtgcaaacgctcaaccgctacgcccacgaa
tactacactttggacgcgcccagcgtgcccgatgccgaatacgaccggctctaccgcgag
ctggaagccctggaagccgaatatccgcagttcaggctgcccgaaagccccacgcagcgg
gtgggcggcgcggtgctggacggctttgaaaccgtggtgcacgccgtaccgatgttgtcg
ctgaacaacgcgttttcgccgcgcgacgacgaaacgggcgcgttcgaccacgccgaattt
ttggcgtttgacgagcgcgtgtgcaaggaattgggcgtgtcgcaggtggaatatgccgcc
gagccgaagtttgacgggctggccgtcagcctgttgtatcaaaacgggattttggtgcag
gcggccacgcgcggcgacggcaccacgggcgaaaacgtaaccgaaaatatcaaaaccgtg
cgcaacatcccgttgaaactgcacggcgaaaagcagcctgcactgttggaagtgcgcggc
gaagtgctgatgctcaaagccgattttgccgcgctgaaccaacgccagctcgaagccggc
caaaagcctttcgccaacccgcgcaacgccgccgcaggcagcctgcgccagctcgattcc
aaaatcaccgctcagcgcaaactgcattttttcgcctacggcatcgcccagctttccggc
gcggaaaggctacctgaaagccatatggaagagctcgcgctgttgcacgaactcggcttt
tcgctgcccgaaggctatttcggcgcgtacaccggcgcggcggccgtgttgcgcgaatac
gaacggctggccgaacaccgcccccgcctgccgtatgaaatcgacggcatggtggtcaaa
gtgaactcgttggccgaacagcaacaactcggcttcgtgtcgcgcgcgccgcgttgggcg
attgcgcacaaattccccgccgaagaagcgctcaccgccgtggaagcgattgacgtgcaa
gtcggccgcaccggcgcaattacccccgtggcgcggcttgcgcccgtgttcgtgggcggc
gttaccgtcaccaacgccacgctgcacaaccaagacgaagtggcgcgcaaagatgtgcgc
gtgggcgacaccgtgattgtgcgccgcgcgggcgacgtgattcccgaagtggtgcgcgtg
ctgttggaacgccgcccgatgcagcctgttgatttattgggcgaacaaatggaagcgaag
tacgagccgttcaaactgcccgaaacctgccccgtgtgcggcagcgcggtggaacgcgaa
acaggcgaagccgtcgcccgctgcaccggcggcatgctctgccaagcccagcgcgcacaa
gggcttatccacttcgccagccgcaaagccatggacatcgccgggctgggcgacaagcaa
atcgaagccctcgtcgccgccgacgtattgcacagctttgccgatatttatcaactggat
atcgcccaactgcaaaccatcaaagacagcaaatccgccgccaccaaatgggcgcagaac
atcttggacagcatcgcccaaagccgtaccccgccgctcgcccgcttcctgtttgccctc
ggcattcgccacgtcggtgaaagcaccgccaagcagctggccgccgcgttcggcaacctc
gatatcgtgcgccgcgcccccgaacccatcctcgcctgcctgcccgacatcggcagcgtc
gtcgcccacgccatcgcccattatttcaggcagcctgcacagcaaaaaatgctggacgac
ctattgcaacacgtcgccccgcaagccgccgccccgtcgccccaaacccgcgcccacgcc
gcacccgaacaatggctgcaacgcctgcccaacatcaaactcagcgaaaaacgcgccgcc
gaactctggcagctcgccggcagcctgcacgccctgcaaaccgaccaagccctgccgcaa
gaatggcaagactggcgcaggcagcctgcacacgccgccttgctgcaagacatcatcgcc
ttcaccgaagggctgcctgaaagcagctcggacgacgtttcaggcagcctgcaccccgaa
aacagccccatcgccggcaaaacctttgtcctaaccggcaccctgcccaccctgaaacgc
gaccaggccgccgccctcatcgaagccgccggcggcaaagtgagcggcagcgtatccaaa
aaaaccgatttcgtggtggcgggcgaagccgcaggcagcaaactggaaaaggctcaggca
ctgggcgtggccgtattgagcgaggaggagttgctggggatgctgggggggagcggatta
aaaggctgcctggaaacctgttcccttatctgtaacccacttgggcgcatgatggtttgg
ctaggcgataacccaaattgcatgcccgcaagtcaacacaaagatagctccatgaaaacc
tacgccaacgccgccgaactgattacggccatccacaccgcactagacaaatacctcgct
gaattttccgacattgccgaagccgacaaacaccgccgtgccgtgcccgacggcaaaact
ccggctgaacatctggcctaccagctcggttggaccagcctgctgttgcaatgggagcga
gacgagcaggcaggccaaaccgttcacacgcctgccgaaggctacaaatggaacgatttg
ggcgggctgtaccagcagttttaccagcaatacagcagcctcacgctgcaagaggcgcaa
gcccaactgcgcgggcaggttgcccaaatttgcgaatggctggaaacgctttctgaacag
gaattgtttgggtccaaccagcgcagatgggcagataaccaggcaaaatggccgatctgg
aaatgggtgcatatcaacactgttgcaccatttaccaacttccgcacacacatccgaaaa
tga
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