Enterococcus faecium Aus0004: EFAU004_01655
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Entry
EFAU004_01655 CDS
T01772
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
efc
Enterococcus faecium Aus0004
Pathway
efc03030
DNA replication
efc03410
Base excision repair
efc03420
Nucleotide excision repair
efc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
efc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EFAU004_01655 (ligA)
03410 Base excision repair
EFAU004_01655 (ligA)
03420 Nucleotide excision repair
EFAU004_01655 (ligA)
03430 Mismatch repair
EFAU004_01655 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
efc03032
]
EFAU004_01655 (ligA)
03400 DNA repair and recombination proteins [BR:
efc03400
]
EFAU004_01655 (ligA)
Enzymes [BR:
efc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EFAU004_01655 (ligA)
DNA replication proteins [BR:
efc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EFAU004_01655 (ligA)
DNA repair and recombination proteins [BR:
efc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EFAU004_01655 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EFAU004_01655 (ligA)
MMR (mismatch excision repair)
DNA ligase
EFAU004_01655 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EFAU004_01655 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Zn_ribbon_NUD
Nlig-Ia
YuzC
Motif
Other DBs
NCBI-ProteinID:
AFC63739
LinkDB
All DBs
Position
complement(1670103..1672139)
Genome browser
AA seq
678 aa
AA seq
DB search
MEHEMTIDEAAKRAEELRTRLNQWSREYYVEDKPTVEDYVYDKEYAELVAIEEQYPDLIT
SDSPTQRVGGKVLEGFEKVTHDIPLYSLNDVFSKEELIAFDQRVQKAVGRVVDYCCELKI
DGLSVSLRYEDGNFVRGATRGDGTVGENITENLKTVRSVPIKLKEPMNIEVRGECFMPKR
SFVQLNQDREAEGKDIFANPRNAAAGSLRQLDSKITAKRNLDTFLYTVADFGPMQAKTQY
DALEELEKIGFHTNREKRLCHSIDEVWSYIEEYHDKRVDLPYEIDGIVIKVNEFSLQDQL
GFTIKAPRWAAAYKFPPEEVETLIENIEWTVGRTGVVTPTAIMTPVRVAGTTVSRASLHN
GDYIKLKDIRLKDTVLIYKAGDIIPEVSQVVLDKRPKDSEEYQLPTHCPVCGSELVHLDE
EVALRCINPKCPAQMKEGLNHFVSRNAMNIDGLGPRVLEQMYDKKLVADVADLYKLTEEE
LLTLDKIKEKSANNILTAIDNSKDNSVERLIFGLGIRHVGAKAAKILAEHFGDLETLSKS
DYESIIALDTIGDIIADSVVTYFSNEEVHELMNELKQAGVNFEYKGLRNAQLQEVESPFK
EKTVVLTGKLTRFTREEAKETIENLGGKVTGSVSKKTDIVVAGEDAGSKLTKAQELGIEV
WTEDQMADALAKSRSVEE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggaacatgaaatgacgattgacgaagctgctaaacgagcagaagaacttcgtacaaga
ctgaaccaatggtctcgcgaatactacgtagaagataaaccaacagtggaagactatgtt
tatgataaagaatacgcagaattagtagcaatcgaggaacaatatcctgatttgatcacg
tctgattctcccactcaacgagtaggcggaaaagtattagaaggttttgaaaaagtcact
catgatattccgctttacagtttgaacgacgttttcagcaaagaagagctgatagctttt
gatcaacgtgtacaaaaagcagtgggacgtgtagttgactattgctgtgaactaaaaata
gatggactttccgtttctttgcgttatgaagatggaaatttcgtgagaggtgcgactcgc
ggggatggaactgtaggagaaaacatcactgaaaacctaaaaactgtccggtcggtccca
atcaaattaaaagaaccaatgaacatcgaagtaagaggcgaatgtttcatgccaaaacgg
tcatttgtccaattgaaccaagacagagaagcagagggaaaagatatctttgcgaatcct
cggaacgccgcagctggttctttgcgtcagttagattctaaaatcacagcgaaaagaaat
ctggacacttttttatacacagtagctgatttcggtcctatgcaagcaaaaacccagtat
gatgcgctagaagagctagaaaaaattggattccacacgaatcgggaaaaacgtctatgt
cattcgattgatgaagtgtggtcatacattgaagaatatcatgacaaacgtgtggatttg
ccctatgaaatcgatggaatcgtcatcaaagtgaatgaattctcgctacaagatcaactt
ggttttactatcaaagcaccgagatgggcagcagcttacaagtttccgccagaagaagtt
gaaacgctaatcgaaaacatcgaatggacagtcggtcgaacaggggtagtaacgccaaca
gctatcatgacaccagtccgagtagcaggaacgacagtaagccgtgccagcctgcataac
ggtgattatattaagttgaaggatatccgcttgaaagatacagttctgatttataaagcg
ggagacatcatcccagaagtttcgcaagtcgtgttagataaacgacctaaagacagcgaa
gaataccaattgcctacacattgtccagtttgtggaagtgaacttgtccatttggatgaa
gaagtagccttacggtgcatcaatcctaaatgccctgctcaaatgaaagaaggtttgaac
cactttgtttcaagaaatgcgatgaatatcgatgggttggggccgcgcgtactagaacag
atgtatgataaaaaactagtagcagatgttgctgatctttacaaattgacagaagaagag
ttattgacgttggacaaaataaaagaaaaatcagcaaataatattttgacagcaatcgac
aacagcaaagataattcggtcgagcggttgattttcgggttaggaatccgacatgtcgga
gcgaaagcagcaaaaattttagcagaacatttcggtgatctagaaacattgagtaaaagt
gactatgagtcgattattgcgcttgatacgatcggtgatatcattgccgacagtgtagtc
acttatttcagtaacgaagaagtccatgaattgatgaatgaattaaaacaagcaggcgtc
aatttcgaatacaaagggcttcgaaatgcccaattgcaagaagtcgagtctccttttaaa
gaaaaaacagtagtccttactggtaaactaacacgatttactcgtgaagaagcaaaagag
acgatcgaaaatcttggcgggaaagtgactggtagcgtatcgaaaaaaacggatatcgtg
gtagcaggagaagatgctggcagcaagctgaccaaagcacaagaattaggaatcgaagtt
tggacagaagatcaaatggcagatgcattggctaaaagtcgctcagtagaagaatga
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