Escherichia fergusonii: EFER_0763
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Entry
EFER_0763 CDS
T00811
Symbol
ligA
Name
(GenBank) DNA ligase, NAD(+)-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
efe
Escherichia fergusonii
Pathway
efe03030
DNA replication
efe03410
Base excision repair
efe03420
Nucleotide excision repair
efe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
efe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EFER_0763 (ligA)
03410 Base excision repair
EFER_0763 (ligA)
03420 Nucleotide excision repair
EFER_0763 (ligA)
03430 Mismatch repair
EFER_0763 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
efe03032
]
EFER_0763 (ligA)
03400 DNA repair and recombination proteins [BR:
efe03400
]
EFER_0763 (ligA)
Enzymes [BR:
efe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EFER_0763 (ligA)
DNA replication proteins [BR:
efe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EFER_0763 (ligA)
DNA repair and recombination proteins [BR:
efe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EFER_0763 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EFER_0763 (ligA)
MMR (mismatch excision repair)
DNA ligase
EFER_0763 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EFER_0763 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
DUF8260
Prok-E2_C
DZR_2
Motif
Other DBs
NCBI-ProteinID:
CAQ88301
UniProt:
B7LL73
LinkDB
All DBs
Position
777750..779765
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQ
RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEA
ASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DETEMLRLLGS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaactacgcttcgccatcatgaatat
ctttatcatgtgatggatgcgccggaaattcccgacgctgaatatgacaggctgatgcgt
gaactgcgcgagctggaaaccaaacatccagaactaattacgcctgattcgcctacccaa
cgtgtaggtgcagcgccgctggcggctttcagccagatccgccatgaagtgccaatgctg
tcgctggataacgtttttgatgaagaaagctttcttgctttcaacaaacgtgtgcaggac
cgtctgaaaagcaacgagaaagtcacctggtgttgtgagctgaagctggatggtcttgcc
gtcagcattctgtatgaaaatggcgttttagtcagtgcagcgacccgtggcgatggcact
accggcgaagacattacatcaaacgtgcgtactattcgcgccattccgctgaagcttcac
ggcgagaatatcccggcgcgtctggaagtgcgtggtgaagtgttcctgccgcaggcgggc
ttcgaaaagatcaacgaagatgcgcgacgcacaggcgggaaagtgtttgctaacccgcgt
aatgcggctgcaggttcactgcgtcagcttgatccgcgtattacagcgaagcgaccgctc
acttttttctgctatggcgtcggtgttctggaaggtggcgagctgccggatactcatctt
ggccgtttactgcaatttaaaaagtggggtttgccggtcagcgatcgagtaacgctttgt
gaatcggcggaagaagtgctggcgttctaccacaaagtggaagaagaccgcccgacgctg
ggctttgatatcgacggcgtggtaattaaggtcaactctctggcacagcaggagcagctt
ggctttgtcgcgcgagccccgcgctgggcggtagcgtttaaattcccggcgcaggaacag
atgacctttgtgcgtgacgtcgagtttcaggttgggcgtactggcgcgattacgcctgtt
gcgcgtcttgaaccagtccatgttgctggtgtgctggtgagtaacgccacactgcataat
gctgacgaaatcgaacgtcttggtttacgcattggcgataaagtggtgattcgccgcgct
ggcgacgtgatcccgcaggtggttaacgtcgtgctttctgaacgcccggaagatacccgt
gaggttgtattcccgacgcattgcccggtatgtggttctgacgtcgagcgtgtggaaggt
gaagctgttgcccgctgtaccggtggcctgatttgcggtgctcagcgtaaagagtcgctg
aaacactttgtttcccgccgcgcgatggatgttgacggtatgggcgacaaaatcatcgat
cagctggttgaaaaagaatatgtccacactccggcggatctgttcaaactcaccgcgggc
aaactgaccggactggagcgcatggggccgaaatcggcacaaaacgtggttaacgcgctg
gaaaaagcgaaagaaaccacctttgcccgtttcctttatgcgcttggcatccgtgaagtc
ggcgaggccactgcagcaggtctggcggcatattttggcacgctggaagcgctggaagcc
gcttcgattgaagagctgcaaaaagtgccagatgttggaattgttgttgcctcccacgtt
cacaacttctttgccgaagaaagcaaccgcaatgtcatcagcgagctgttggcggaaggt
gttcactggcctgcaccggtagtaatcaacgcggaagagattgacagcccgtttgccggt
aaaaccgtggtgcttacgggcagcttaagtcagatgtcgcgtgatgacgctaaagctcga
ctggtcgaactgggggcgaaagtcgcgggcagcgtgtcgaagaaaaccgatctggtgata
gcgggtgaagctgcaggatctaaactggcgaaggcgcaggaactgggcattgaagtcatc
gacgaaacggaaatgctgcgtttgctgggtagctga
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integrated database retrieval system
