Effusibacillus dendaii: skT53_21140
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Entry
skT53_21140 CDS
T06872
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eff
Effusibacillus dendaii
Pathway
eff03030
DNA replication
eff03410
Base excision repair
eff03420
Nucleotide excision repair
eff03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
skT53_21140 (ligA)
03410 Base excision repair
skT53_21140 (ligA)
03420 Nucleotide excision repair
skT53_21140 (ligA)
03430 Mismatch repair
skT53_21140 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eff03032
]
skT53_21140 (ligA)
03400 DNA repair and recombination proteins [BR:
eff03400
]
skT53_21140 (ligA)
Enzymes [BR:
eff01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
skT53_21140 (ligA)
DNA replication proteins [BR:
eff03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
skT53_21140 (ligA)
DNA repair and recombination proteins [BR:
eff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
skT53_21140 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
skT53_21140 (ligA)
MMR (mismatch excision repair)
DNA ligase
skT53_21140 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
skT53_21140 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BCJ87129
UniProt:
A0A7I8DDU2
LinkDB
All DBs
Position
complement(2004410..2006431)
Genome browser
AA seq
673 aa
AA seq
DB search
MTQEQAAARAEELRSIIKTYDYQYYVLDQPTVSDVEYDQLMRELISLEEQFPELVTVDSP
TQRVGGGVLEGFEKVAHRVPMLSLANAFQAEDLRDFDRRIKSIVPNESVDYVAELKIDGL
AVSLVYENGVFVRGATRGDGEIGEDITSNLKTIKSLPLTLPQPISIEVRGEAYLPKKEFE
RINREREAAAEPLFANPRNAAAGSLRQLDPKIVARRNLSIFTYAIGWVEGVDIPTHAAGL
ELLSEFGFKVNNETRVLPDIESVIEFVNSWTGERRAALPYEIDGIVIKVNQSNLYPRLGT
TAKSPRWAIAYKFAAEQAETTLRDIIVSVGRTGAVTPTAILDPVRLAGTTVSRATLHNED
RIRELDVQIGDTVVVQKAGDIIPEIVRVVTEKRDGSERPFQMPTHCPECDAELVRLQGEV
ALRCINPQCPAHNRESIIHFVSRDAMNIDGLGEQIVTQLFEQGLVQDPSDLYYLTMDQLL
PLERMGQKSAENLLASIARSKENSVERLIFGLGIRFVGEKAAKLLAGHFGTLDRLMQADI
EELVTVPEIGIKMADSIKQFFNQEDTLEVIEKLRRAGVNFNYHRPVITASDNSPFAGKTF
VLTGTLEAMDRKEAGRLIEQFGGKVTGSVSKNTDFVVAGEKAGSKLDKARELGVQIADEQ
TLLGWLRESGYNG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgacacaggaacaagcggctgcgagggcggaagaattgcggtcgatcatcaaaacgtac
gattaccaatactatgtgttggaccaaccgaccgtcagcgatgtggaatatgaccaactg
atgcgggaactgatttcacttgaagaacagtttcccgaactggtaacagtcgattcgcct
acgcaacgagtaggcggcggcgtactggaaggttttgaaaaagtggcgcatcgtgttccg
atgttgtcgcttgcaaacgcgtttcaggcggaagacctaagggattttgaccggcggata
aaatcgattgtaccgaacgagtcggtcgattatgtggcggagttgaaaatagacggattg
gcggtctcgctggtttacgaaaacggcgtctttgttcgcggggccacgcgaggcgacggc
gaaatcggagaagatatcacaagcaacctgaaaactataaaatcgttgccgcttacattg
ccgcagccgatttccatcgaagtacggggcgaagcctatcttccgaaaaaagagtttgag
cgaattaatcgggagcgggaggcggcagcggaaccgttgtttgccaatccgagaaacgcg
gcagccggctcgctgcggcagctggatccgaaaattgtggcgaggcgcaacctgtccatt
ttcacatatgcgatcggctgggtggaaggtgttgacatacctacacatgcggccggactg
gagctgctgtctgaattcggttttaaagttaacaacgaaacgcgggttctgcccgatatc
gaatcggtcattgaatttgtgaactcctggacgggtgaaagacgtgcggcccttccttat
gaaatcgacgggattgtgatcaaagtcaaccaatccaatctgtacccgcgcctgggaacg
acggcaaagagcccccgttgggcaattgcctacaaatttgcggctgaacaggcagagact
acattgcgtgatattattgtcagcgtgggacgcaccggagcggttacgccaacagcgatt
ctcgatccggtacgactggcgggcactacggtatcccgcgccaccttgcataatgaagat
cgaattcgcgaactggatgtgcaaattggagatacggtcgtcgtgcaaaaagcgggtgac
atcatccccgaaattgtccgtgtggtgacagaaaaacgggatggttccgaacggcctttt
caaatgccgactcactgtccggagtgcgatgccgaactggttcgtctgcaaggggaagtg
gcgctgcgctgtatcaacccacagtgtccggcgcataaccgggaaagcatcattcatttt
gtttcgcgcgatgcgatgaatattgacggcttgggtgaacagattgtgacgcaactgttt
gaacagggattggtgcaggatccgtccgacctttattatttgacgatggatcaactgcta
cccttggaacggatgggtcaaaaatcagccgaaaatcttctggcgtccattgcacgttcg
aaagaaaattcggtggaacggctgatctttggtttgggtattcggtttgtcggagaaaaa
gcggccaagctgctggcgggccattttggtacgctagatcgtctgatgcaggcggatatt
gaggaactggtgaccgttcccgaaattggaataaagatggcggactcgatcaaacagttt
ttcaatcaggaggataccctcgaagtgattgaaaagttgcgtcgtgcaggggtcaatttt
aactaccacagacctgtcataaccgcttccgataattcgccgtttgccgggaagacgttt
gtattaaccggaacgctggaggcgatggaccggaaagaagcgggccgtttgatcgaacag
tttggcggcaaggtgaccggctccgtttccaaaaatacggattttgtggtcgctggtgaa
aaggccggttccaagttggataaagcccgcgagttgggggttcagattgctgatgagcaa
acgctgttaggatggctgcgagaatcggggtataacgggtaa
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