Enterococcus faecalis OG1RF: OG1RF_10201
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Entry
OG1RF_10201 CDS
T01882
Symbol
trcF
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
efi
Enterococcus faecalis OG1RF
Pathway
efi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
efi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OG1RF_10201 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
efi03400
]
OG1RF_10201 (trcF)
Enzymes [BR:
efi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OG1RF_10201 (trcF)
DNA repair and recombination proteins [BR:
efi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OG1RF_10201 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
AAA_7
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AEA92888
LinkDB
All DBs
Position
198113..201682
Genome browser
AA seq
1189 aa
AA seq
DB search
MENSRKEGPCLNIIERISQTEIAKSWRSQLMTTGTRQLITGLSGSAKTLLMAGALQKTHQ
KIVIAVPNLYYANQLVDDFLNILPSEQVHLFPVDEVLSAEMAFSSPEARADRVSALNFLM
TANAGIVVVPVAGLRKYLPTKETWQNAQLHWEIGTEVEPEILAQRLVLMGYERQSMVGKP
GEFSIRGSIIDVYPLNAEYPVRVELFDVEIDSIRYFEADTQRSLENLEEVTISPMTDLVF
SKADMNHGMMRLQDALEKRLATAKDQTETDFLEEYFGQLLSSWEQGIPTENAHYYTDFLY
QQKTTLLDYLPENSLLFVDDYSRMMETEREIAREEAEWQTLKIEEMRVFSEQTFGVDFHD
QLRKTARNTTFFSLFQKGMGNLRFQEVHNFQYRSMQQFFGQMPLLKAEVDRWQKQNQTVV
VFVPTKERIQKVEELFQDFDIPSVVSNWDQLLDGYVQIVQGALQTGFELPKNKLVAITEK
EIFHTTTKKRARRQTISNAERLKSYSDLKTGDYVVHANHGIGKYIGMETLEVDGVHQDYM
TILYQNDDKLFIPVTQLNLIQKFVASESKTPKINKLGGSEWTKTKRKVASKIEDIADDLI
LLYATRESEKGYAFPPDDAYQKEFEEAFPYSETDDQLRSAAEIKHDMEKSRPMDRLLVGD
VGFGKTEVALRAAFKAVSNNKQVAFLVPTTILAQQHYETIQERFEGFPVEIGLLSRFRTK
KQQNETIEKIKHGQVDIVIGTHRLLSQDINFSDLGLLIIDEEQRFGVKHKERLKQLRSQV
DVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRYPIQTYVMENNPGAIREAIEREMARD
GQVFYLYNRVDTIERKVEELQALVPDARIAYAHGQMTEVQLENTLFDFIEGQYDILVTTT
IIETGVDIPNANTLFVENADYMGLSTLYQLRGRVGRSNRVAYAYFMYEQQKILNEVSEKR
LEAIKDFTELGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLSEAVARKQGK
NIQDQKTSVEIDLGIDAYIPGTYITDERQKIEIYKRIRQLENMDMYEELEADLLDRFGEY
PDEVAHLLTTGRIKMDGDRALLESIRKRDQKVKFVLSKIGTKTYSVEQLFEALSATSLKA
DLAVEKEQMTISLKLPKDCKEAVWIQEIAAFTTALRQEKYKHSQETDSL
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatagcagaaaggagggcccttgtttgaatattatcgaacgaattagccaaaca
gaaattgctaaatcatggcgcagtcaactaatgacaacaggaacgcgccaactaattact
gggttatcaggctctgctaaaacattactgatggcaggcgctttacaaaagacgcatcaa
aaaattgttattgcggtcccaaacctatactatgccaatcaattagtagatgatttttta
aatattttaccttcagaacaagttcatctatttccagtagatgaagtgttatccgccgaa
atggccttttcttcaccagaagcgcgcgcagatcgagtgagtgcgttaaatttcctgatg
acagcgaatgcaggaatcgtggtcgtaccagtagctggactacgaaaatatttgccaacg
aaagaaacgtggcaaaatgcgcaacttcattgggaaatcgggacagaagtagaacctgaa
atcctcgcgcaacgcctagtgttaatgggctatgaacgccaatcgatggtcgggaagcct
ggcgaatttagtattcgcggaagcattattgatgtctatccgctaaatgccgaataccct
gttcgggtggaactgtttgatgttgaaattgactccatccgttatttcgaagcagatacc
caacgttcattagaaaatcttgaagaagtaacgatttcaccaatgactgatttagtattc
tcaaaggcagatatgaatcatggcatgatgaggttacaagatgctctagaaaaacgttta
gcgacagctaaagatcaaacagagaccgattttttagaagaatattttggtcagttgctg
tcttcttgggaacaagggattcctacagaaaatgctcactattatacagattttctgtac
caacaaaaaactacgctgttagattatttaccagaaaatagtttgctttttgtggatgat
tattctcgtatgatggaaacggagcgagaaatcgctagagaggaagcggaatggcaaacc
ctgaaaattgaagaaatgcgcgtgttttctgaacaaacttttggcgtagactttcatgat
caattgcgaaaaactgcacgaaatacgaccttcttttcactttttcaaaaaggaatgggg
aatcttcgtttccaagaagtccataatttccaatatcgttcaatgcaacaattcttcggt
caaatgccgttgctaaaagcggaagtggaccgttggcaaaagcaaaaccaaacggtcgtt
gtttttgttcctacgaaagaacggattcaaaaagtcgaagagctattccaggactttgac
atacctagcgtagtaagcaattgggatcagctgttagatggatatgtccaaattgttcaa
ggggcattacaaacagggtttgaattacctaaaaacaagctcgtggcgattacggaaaaa
gaaatttttcatacaacgaccaaaaaacgggcacgtcgtcaaacaatctctaatgcggaa
cgtttgaaaagttatagcgacttaaaaacgggcgattatgtcgttcatgcgaatcacggg
attggtaaatatattggtatggaaaccttagaagttgatggggttcatcaagattacatg
actatcttgtaccaaaatgatgacaagttatttattccagtaacacaattgaacttgatt
caaaagttcgttgcttccgagtctaaaacgccgaaaattaacaagctaggcggcagtgaa
tggacgaaaactaaacgaaaagttgcttcgaaaattgaagatatcgcggatgatttaatc
ttactttatgcgacaagagagtcggaaaaaggctatgcttttccgccagatgatgcgtat
caaaaagaatttgaagaggcttttccgtattctgaaacagatgatcaattacgtagtgct
gccgaaattaaacacgacatggaaaaatctcgaccaatggatcgtttgttagttggcgat
gtagggtttggtaaaacagaagtggctttacgagcggctttcaaagctgttagcaacaat
aaacaggttgcctttttagtgccaacaactattttagcgcaacaacattacgaaacgatt
caagagcggtttgagggctttcctgtagaaattggtttattaagtcgtttccgcacgaaa
aaacagcaaaatgaaacaattgaaaaaattaaacatggccaagtagatattgtgattggt
acccatcgtttattgtcgcaagatattaattttagtgatttaggcttgttgattattgat
gaggaacaacggtttggagtgaaacataaagaacgactaaaacaattgcgttcacaagtg
gatgtcttgacgttaacagcaacgccaatcccaaggacccttcatatgtcaatgttaggt
gtccgtgatttatccgtcatcgaaaccccaccagagaatcgttatccgatccaaacgtat
gtcatggaaaataatcctggggcgattcgggaagcgattgagcgagaaatggcccgagat
ggtcaagtcttttatttatacaatcgagtagatacgattgaacgaaaagttgaagagtta
caagcactagttccagatgcacgaattgcgtatgcacatggtcaaatgacagaagtacaa
ctggagaatactttgtttgattttattgaaggacaatatgatatattagtcactacaaca
attattgaaacaggagtagatattcctaatgctaataccttgtttgtagaaaatgcggac
tacatgggcttatctacgttgtatcaattacgtggtcgtgtggggcgtagcaatcgagtg
gcctatgcttattttatgtacgaacagcaaaaaatcctaaacgaagttagtgagaaacgt
ttagaagcaattaaagactttacggaattaggttctgggttcaaaattgcgatgcgtgac
ctttccattcgaggggccggaaaccttcttggtgcccaacaacatggcttcattgattcg
gttgggtttgatatgtactcacagatgttatctgaggcagttgctcgtaaacaaggaaaa
aatatccaagaccaaaaaacgtctgttgaaattgatttgggcattgatgcttatattcca
ggaacgtacattacagacgaacgacaaaaaattgaaatttataaacggattcgtcaatta
gaaaatatggatatgtacgaagaattagaagcggacttgttagaccgctttggagagtat
cctgacgaagtggcgcatttattaaccactggccgtatcaaaatggatggcgaccgtgcc
ttgttagaaagtattcgtaaacgcgatcaaaaagtcaagtttgtgttaagtaaaattggc
acaaaaacatactctgtggagcagttgtttgaagcgttatcggcaaccagcttaaaagcg
gatctagcagttgagaaagaacaaatgactatttccttgaagttgccgaaagattgtaaa
gaagctgtttggattcaagaaattgctgcttttacaaccgcattgcgacaagaaaaatac
aaacattcgcaagaaacggattccctttaa
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