Enterococcus faecalis OG1RF: OG1RF_10576
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Entry
OG1RF_10576 CDS
T01882
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
efi
Enterococcus faecalis OG1RF
Pathway
efi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
efi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OG1RF_10576 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
efi03019
]
OG1RF_10576 (srmB)
03009 Ribosome biogenesis [BR:
efi03009
]
OG1RF_10576 (srmB)
Enzymes [BR:
efi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OG1RF_10576 (srmB)
Messenger RNA biogenesis [BR:
efi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OG1RF_10576 (srmB)
Ribosome biogenesis [BR:
efi03009
]
Prokaryotic type
rRNA helicases
OG1RF_10576 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AEA93263
LinkDB
All DBs
Position
604354..605964
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AA seq
536 aa
AA seq
DB search
MKTPETRKKSFFPKQNLGGYHLKFKELGLAPELLSAVERAGFEEATPIQSETIPLALAGK
DVIGQAQTGTGKTAAFGLPMLNKIDADNRVIQGLVIAPTRELAIQTQEELFRLGRDKKIR
VQAVYGGADIGRQIRGLKDRPHIVVGTPGRLLDHINRRTLKLETVETLVLDEADEMLNMG
FLEDIEKIISQVPEQRQTLLFSATMPPAIKNIGVKFMKQPEHVKIKAKEMTADLIDQYYV
RSKDFEKFDIMTRLLDVQTPELTIVFGRTKRRVDELARGLEARGYKAEGIHGDLSQQKRM
SVLRSFKNGNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKGGMS
VTFVTPNEMGYLHVIENLTKKRMTPLRPPTEKEAFKGQLSAAVETIESDLEENGLDKYLE
SAEALLEKYSATDLAALLLKTVAKDPADAVPVKITPERPLPSNKKGFNKNGRGGGGGNNR
NRNRGGNGKGGSYRGNKNHKDGDRNYKNSDRKNKDQRGGKRHNDKKRGFVIRENAK
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
gtgaagacacctgaaactaggaagaaatcgttctttccgaaacaaaatctaggaggatat
catttgaaatttaaagaacttggtttagcgccagaattattatcagcggtagaacgcgca
ggcttcgaggaagcaacccctattcaatcagaaacaattccgttagcgttagcaggaaaa
gacgtaatcggacaagcacaaacaggaacagggaaaaccgctgcttttggcttaccaatg
cttaacaaaattgacgcagacaaccgcgttattcaaggattagtcattgcaccaacccgt
gagttggctatccaaacacaagaagagttattccgtttaggccgcgataaaaagattcgc
gtccaagccgtttacggtggggctgatatcggtcgccaaatccgtggactaaaagatcgt
ccacatatcgttgtaggtacaccaggacgtttactagaccatattaatcgtcgtaccttg
aaattagaaactgttgaaacattagttttagacgaagcagatgaaatgttaaacatgggc
ttcttggaagacattgaaaaaatcatctcacaagtgccagaacaacgtcaaacacttcta
ttttcagcaactatgccgccagcaatcaagaatattggcgtgaaattcatgaaacaacca
gaacatgtgaagattaaagccaaagaaatgacggctgatttaattgatcaatattatgta
cgttcaaaagactttgaaaaatttgacattatgacacgtttactagacgtgcaaacccca
gaattgaccattgtctttggtcggacaaaacgccgtgttgatgaacttgcccgcgggtta
gaagcgcgtggttacaaagcagaaggcatccatggcgacctatcacaacaaaaacggatg
agcgttttacgttcattcaaaaatggtaacttagatatcttagtggcaacagatgtagca
gcacgtgggttagatatttcaggtgtcacccatgtctataactacgatattccacaagat
ccagaaagttatgttcaccgtattggtcggacaggtcgtgctggtaaaggtggtatgtct
gtgacgtttgtaacaccaaacgaaatgggttacttacatgtcatcgaaaacctaacgaaa
aaacggatgacaccattacgtccaccaaccgaaaaagaagcatttaaaggacaattaagt
gcagctgttgaaaccatcgaaagtgatctagaagaaaatggtttagacaaatatctagaa
tctgctgaagcgttattagaaaaatattcagcgacagacttagctgcgttattattaaaa
acagtagcgaaagatccagcagatgcggttcctgtaaaaattaccccagaacgaccattg
ccttcaaataaaaaaggctttaacaaaaatggccgtggtggtggcggtgggaacaaccgt
aatcgcaaccgtggtggcaatggtaaaggtggtagctatcgtggcaacaaaaaccataaa
gatggcgaccgtaattacaaaaatagcgaccgcaaaaataaagatcaacgtggcggcaaa
cgtcataacgataaaaaacgtggtttcgtcattcgcgaaaacgccaaataa
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