Candidatus Endolissoclinum faulkneri L5: P856_75
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Entry
P856_75 CDS
T04221
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
efk
Candidatus Endolissoclinum faulkneri L5
Pathway
efk03030
DNA replication
efk03410
Base excision repair
efk03420
Nucleotide excision repair
efk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
efk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P856_75 (ligA)
03410 Base excision repair
P856_75 (ligA)
03420 Nucleotide excision repair
P856_75 (ligA)
03430 Mismatch repair
P856_75 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
efk03032
]
P856_75 (ligA)
03400 DNA repair and recombination proteins [BR:
efk03400
]
P856_75 (ligA)
Enzymes [BR:
efk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P856_75 (ligA)
DNA replication proteins [BR:
efk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P856_75 (ligA)
DNA repair and recombination proteins [BR:
efk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P856_75 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P856_75 (ligA)
MMR (mismatch excision repair)
DNA ligase
P856_75 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P856_75 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Zn_ribbon_NUD
Nlig-Ia
PTCB-BRCT
BAR_2
Motif
Other DBs
NCBI-ProteinID:
AHC73322
UniProt:
V9TT44
LinkDB
All DBs
Position
112574..114661
Genome browser
AA seq
695 aa
AA seq
DB search
MNYAKYKAVEELTEIQAKEELARLAKIIAKADVLYYQKNAPNLDDSEYDQLRLRNKAIEK
RFPKSKRYDSPSEIVAPGPAKGFSKVRHALPMLSLTNAFDSKDVREFVRRVRRFLKLPNG
TPIAMMTEPKIDGLSLSLRYENRKLVQGATRGDGIEGENITRNLENIKEIPKILPKNVPE
VIEVRGEIYINKEDFLALNERQANAGAKLFANPRNAAAGSLRQLDPQITRTRPLRFFAYS
WGAVSDLYTGTQEECLKELREWNFIVNPLSELHDNLEDMLEVYAKIALKRYDLPYEIDGV
VYKVNRMDWQNQLGMISRSPRWAIAHKFKTEQVTTILREIVIQVGRTGTLTPVARLKPVK
ICGVTITNANLHNEDEIYRKDLRVGDTVIIHRAGDVIPQVIGVIDDKRPNDSQQYIFPDY
CPRCGSKAVRLDDQSVRRCSGNIKCSAQAIAQLKHFVSREAFDISGFGVKQISQYYYWGI
IDTPASIFRLSEHRNKLIGYKESKIVSTDKLLAAIEGRRTISLERFIYSLGIRQVGKNIS
RLLANHYGSINAMHSAMMQAVNMTNNAYAELISINHIGDALVNELVNFFANSYNRKLLDD
LIKELTIEEFKPSQVSNNCIAGKTMVFTGTLQCIHRNDAKSSLESLGAKVVGYVSKKTDY
VVVGADPGFKAVKAKALGIKMISEEELLTLIKHIF
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgaattatgctaaatataaagccgttgaagaattgactgaaatccaagcgaaagaagag
ctagctcgtttagctaagatcatcgctaaagcagacgtactttactatcaaaaaaatgcg
cctaatctggatgactcggagtatgatcagcttcgtttgcgcaataaagcaattgagaaa
agatttcctaaatcgaaaagatatgatagccccagcgaaattgtagcgcctggaccagcg
aaaggttttagcaaagttcggcacgctcttccaatgttgtcattaaccaatgcctttgat
agtaaagatgttagagagtttgtgcgccgtgtacgtcgttttcttaagcttccgaatggc
actcctattgcaatgatgactgagcctaaaattgatggcttatcactttctttacgctac
gaaaacagaaaactagttcaaggagcaactcgtggcgatggtattgaaggtgagaatatt
acacgtaatcttgaaaacattaaagaaattcctaaaattttgcccaaaaatgtaccagaa
gttatcgaggtacgtggtgaaatttatattaacaaggaagattttcttgctttgaacgag
cgccaagcgaatgctggtgcgaaactttttgctaatccacgcaatgcggctgctggctct
ctgagacagttagatcctcaaattactcgcactaggccattgcgattttttgcctattct
tggggagcagttagtgatctttacactggtactcaagaagaatgtcttaaggagttgcgg
gaatggaattttattgttaatccgttatctgagttgcatgataacttagaggatatgctt
gaagtttatgcgaagattgctttaaagcgctacgatttaccttatgaaattgacggagta
gtttataaagttaacagaatggattggcagaatcaacttggcatgatcagtcgctcaccg
cgttgggctattgcccataaatttaagactgagcaagttactactattttgcgtgaaatt
gttattcaggttggccgtacaggtactttaactccggttgctcgattgaaaccagtaaaa
atttgtggtgtgactattactaacgcaaatttgcataacgaagatgaaatctaccgcaaa
gacctccgggtcggagatactgtgataattcatcgtgcaggtgatgtaattcctcaagtt
attggagttattgatgataaacgaccaaatgattcacagcaatacatatttccagattat
tgcccacgctgcggctccaaagcagttcggttagatgatcaatccgtgcgccgctgcagc
ggtaatataaaatgctctgctcaggcgattgcccaattaaaacattttgtcagtcgtgaa
gcttttgatattagcggctttggcgtaaagcagatatcacagtattattattggggaata
attgatactccagctagcatttttcggcttagcgaacatcgtaataagctgattggttac
aaagaaagtaagatagtatctactgataaattgttagcagctattgagggtagacgaaca
ataagcttagagcggtttatttattctctgggaattcgtcaagtaggcaaaaatatctct
cgtttgcttgccaatcactacggtagtataaatgcaatgcattctgccatgatgcaagca
gttaatatgacaaataatgcctatgctgagctgatcagcatcaatcatattggagatgca
ttagttaatgaattggttaattttttcgctaattcttacaacagaaaattgcttgatgac
ttaatcaaagagcttacaattgaagaatttaagccctctcaggtatctaataattgtatt
gctggaaaaaccatggtttttacaggcactttgcaatgtattcatcgcaatgatgctaaa
tcatcactagaatcgcttggcgctaaggttgttggatatgtatcaaaaaaaacagattat
gttgtagttggagcagacccaggctttaaggcggtgaaggctaaagcacttggtatcaaa
atgataagtgaagaggaattacttactttgattaaacatattttttag
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