Epinephelus fuscoguttatus (brown-marbled grouper): 125896717
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Entry
125896717 CDS
T08419
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo04115
p53 signaling pathway
efo04145
Phagosome
efo04148
Efferocytosis
efo04350
TGF-beta signaling pathway
efo04510
Focal adhesion
efo04512
ECM-receptor interaction
efo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
125896717 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125896717 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
125896717 (thbs1b)
04148 Efferocytosis
125896717 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
125896717 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
125896717 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125896717 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
efo04131
]
125896717 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
efo00536
]
125896717 (thbs1b)
Membrane trafficking [BR:
efo04131
]
Endocytosis
Phagocytosis
Opsonins
125896717 (thbs1b)
Glycosaminoglycan binding proteins [BR:
efo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125896717 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
Laminin_G_3
cEGF
EGF
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
125896717
NCBI-ProteinID:
XP_049445500
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All DBs
Position
LG11:complement(24941945..24956054)
Genome browser
AA seq
1169 aa
AA seq
DB search
MKLTGIFLLLMLWSCESARVAESRDDNSVYDLFELVQVPKKSQAVTMVKGDDPYSPAYKI
LMPDLIPPVPESAFRDLIDSIHAEKGFLLLLNFKQFKRTRGSLLTVEKRDGSGPVFEIVS
NGKANTLDIVYSTENKQQVVSIEDVDLATGHWKNITLFVQEDQAQLYAGCEEVNTAEMDA
PITSILTQETPGSAQLRIGKGAVKDRFMGVLQNVRFVFGTSLDAILRNKGCQSSMTTDSM
ILQNLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLVSMFKELKGLGVVVKELSNELRKLTD
ENKLIMTRIGIHSGVCIHNGVVRKNREEWTVDDCTECTCQNSATVCRKISCPLIPCANAT
VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR
DCYLQECDKRFKQDGNWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKDCEGEGRQT
EKCQKSPCPINGNWGPWSPWDTCSLTCGGGVQHRKRLCNDPAPKYGGKECVGNAKDTQMC
NKKACPVDGCLSNPCFAGAKCTSFPDGSWKCGKCPAGYTGNGIKCKDVDECKEVPDACFE
FNGVHRCENTDPGYNCLPCPPRYSGPQPFGRGVEQAAAKKQVCTPRNPCLDGSHDCNKNA
RCNYLGHFADPMYRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL
PNSGQEDYDKDGIGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS
NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCDYVYNVDQRDTDLDGVGDMCDNCPLEHN
PDQMDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGNIYDK
TYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgacagggatatttttgctattgatgctttggagctgcgagagcgcgcgagtc
gcagagagccgagacgacaacagcgtgtatgacttgttcgagctcgtccaagtcccgaag
aagagccaagcggtcaccatggtgaagggagacgacccgtacagccccgcctacaagatc
ctcatgccggacctgatccccccggtccccgagagcgcctttagggacctgatcgactcc
atccatgccgagaagggcttcctcctcctgctcaacttcaagcagttcaaacggaccagg
ggcagcctcctgaccgtggagaagcgggacggctccggacccgtgttcgagatcgtctcc
aacggcaaagccaacaccttggacatagtttactccaccgagaacaagcagcaggtggtt
tccattgaagatgtggacctggcgacgggccactggaagaatatcacgctgttcgtgcag
gaggaccaggcgcagctgtacgcaggatgcgaggaggtgaacacagccgagatggatgcg
cccatcaccagcatcctgacgcaggagaccccgggcagcgcgcagctcaggatcgggaag
ggagccgtgaaggacaggttcatgggggtcctgcaaaacgtgcggtttgtgtttggaaca
tctctggatgccatcctccgcaacaaaggatgccaaagctccatgacgactgactccatg
atcctgcagaaccttaacggctcctcagccatcaggacagagtacactggacacaagacg
aaagacctgcagatggtctgtggcttctcctgtgaagacctggtcagcatgtttaaggag
ctgaagggcctcggagtagtggtcaaggagctgtccaatgaactccgtaagctgacggat
gagaacaagctgataatgacccgcatcggcattcacagtggcgtctgcatccacaacggc
gttgtgcgcaagaacagagaggagtggactgtggacgactgcaccgagtgcacctgtcag
aactctgctactgtgtgccgcaagatctcctgccccctgatcccctgtgctaatgctact
gttcctgatggagagtgctgcccacgctgtggaacaccgagcgactatgcagaggacggc
tggtcgccgtggtctgaatggacccattgttccgtgtcatgtgggcggggcatccagcag
cgtgggcgctcttgcgaccgtatcaataacaactgcgagggcacctctgtgcagacccgc
gactgctacctccaggagtgtgacaagcgattcaagcaggacggcaactggagccactgg
tcaccctggtcatcctgctctgtcacctgtggtgctggtgtcatcacccgtatccgcctc
tgcaactcccccacccctcagcttggaggcaaagactgcgagggagagggccggcaaaca
gagaagtgccagaagtctccatgccccatcaatggcaactggggaccctggtcaccatgg
gacacctgcagtctcacctgtggaggtggtgtccagcatcgtaaacgtctgtgcaatgac
cctgcaccaaaatatggtggcaaagagtgtgttggtaatgccaaagacacccagatgtgc
aacaagaaagcctgcccagttgatggctgcctgtctaacccctgctttgccggcgccaag
tgcaccagtttccctgacggttcctggaagtgtggaaagtgcccagctggctacactggc
aatgggatcaagtgtaaagatgttgatgagtgtaaggaggttccagatgcctgctttgag
ttcaatggtgtgcaccgctgtgagaacacagatcctggctacaactgtctgccctgccct
cctcgctactcaggaccccagccatttggcagaggtgtggagcaggctgctgctaagaaa
caggtatgcacgccccgtaatccctgcctcgatggaagccacgactgcaacaaaaacgcc
cgctgtaactaccttggacactttgccgatcccatgtaccgctgcgagtgcaagcccggc
tacgctggcaacggccacatctgcggagaggacacagatcttgatggatggcccaacgct
gacttggtttgtgtggagaacgccacctaccactgcaaaaaggacaactgtcccaacctc
cccaactctggtcaggaagattacgataaggacggcattggagatgcttgtgacaatgat
gatgacaatgatggcattcctgatgacagggacaactgtccattcgtgtacaaccccagg
cagtatgactacgaccgtgatgatgtgggtgatcgctgtgacaactgtccctacaatagc
aacccagaccaaacagacacagacaacaatggagagggcgatgcctgcgctgtggacatt
gatggcgatggcatactgaatgagaaagacaactgcgactatgtgtacaatgtcgaccaa
agagacacagatctggacggagtgggagacatgtgcgataactgtcccctggaacataat
cctgatcagatggattccgatgatgaccgggtgggagacaagtgtgacagcaaccaggac
atcgatgaggacggacaccagaacaacctggataactgcccatacattcccaacgccaac
caggctgaccatgacaaggatggcaagggagacgcctgtgaccatgatgacgacaatgac
ggcatccctgatgacaaggacaactgcagactggccttcaatcctgatcaactggactct
gatggtgatggtcgtggagatgcttgtaaagatgactttgaccaagacaacgtgcccgac
atctatgatgtgtgcccagagaactttgacattagtgagacagacttccgcaaattccag
atggttcctctggaccccaaaggcacttcgcagattgatcctaactgggtcgtccgccat
cagggtaaagagctggttcagactgtcaactgtgaccctggcattgctgttggttaccac
gagttcaactcagtggacttcagtgggactttcttcatcaacacagagagggatgatgat
tacgctggctttgttttcggctaccagtccagttccaggttctacgtggtgatgtggaag
cagattacgcagacatactggtcgaataaacccaccaaggcccagggctactctggcctg
tccattaaagtggttaactccaccactggcccaggagagcacctcaggaatgccctctgg
cacacaggaaataccccaggacaggtccgcactctctggcacgacccaaagaatgttgga
tggaaagacttcaccgcttacagatggcatctgatccacagaccgagaacaggacttatt
agagttgtgatgtatgagggcaagaagatcatggcagattctggtaatatctatgataag
acatatgctggcggcaggctaggtctttttgtcttctcacaagagatggtatacttctca
gacctcaagtacgaatgcagagatgcctaa
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