Epinephelus fuscoguttatus (brown-marbled grouper): 125900030
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Entry
125900030 CDS
T08419
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
efo
Epinephelus fuscoguttatus (brown-marbled grouper)
Pathway
efo04010
MAPK signaling pathway
efo04120
Ubiquitin mediated proteolysis
efo04140
Autophagy - animal
efo04144
Endocytosis
efo04620
Toll-like receptor signaling pathway
efo04621
NOD-like receptor signaling pathway
efo04622
RIG-I-like receptor signaling pathway
efo05132
Salmonella infection
efo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
efo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125900030 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
125900030 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125900030 (traf6)
04140 Autophagy - animal
125900030 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
125900030 (traf6)
04621 NOD-like receptor signaling pathway
125900030 (traf6)
04622 RIG-I-like receptor signaling pathway
125900030 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
125900030 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
125900030 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
efo04131
]
125900030 (traf6)
04121 Ubiquitin system [BR:
efo04121
]
125900030 (traf6)
Enzymes [BR:
efo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125900030 (traf6)
Membrane trafficking [BR:
efo04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
125900030 (traf6)
Ubiquitin system [BR:
efo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
125900030 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
TRAF6_Z2
RING_XB3-XBAT31
Sina_ZnF
U-box
CEP104_ZnF
TRAF3_RING
Prok-RING_4
zf-RING_11
zf-TRAF_2
DM
Motif
Other DBs
NCBI-GeneID:
125900030
NCBI-ProteinID:
XP_049450735
LinkDB
All DBs
Position
LG2:complement(44545188..44552451)
Genome browser
AA seq
570 aa
AA seq
DB search
MACFDSNKGSLEEDSYEGAVGGELSGCALAMLEKESLLSPSESPGTFMSSTSSSLQAPAP
LQGYDVDFDPPLESKYECPICLMALRNAIQTPCGHRFCKNCIEKSIRDTGQRCPVDNERL
SEDQLFPDNFAKREILSLTVRCPNSGCAEKMELRHLENHLAQCQFATVPCPQCQQSVRMS
HLEEHKTAECRQRPVSCPDCVASFVYEERELHEQQCPFANVKCQYCEMDLIRDQMESHCD
TDCPKAPIACNFSTFGCKERMQRHNLAQHMQEFTQMHMRYMAEFLRGLSLNGTTPKSLWA
LGPSVSSEDQGAAASVSACSGPRGGAASCSSNSAPSQPTEEMQRLREMDGRLVKQDHQLR
ELIILKETQAGHLAEIRRRVSMLEETVKELEAQQSHGIFIWRLRGFSAHLRSQEAGLPVV
EHSPGFYTGRPGYKLCLRLHLQTPNAPRCSNFISLFVHTMQGAFDGLLSWPFQGTIRLAI
LDQGPEGQHHMEVMETKPDLQAFQKPTIQRNPKGFGYVTFLHLQQLSQRAFIKDDTLLIR
CEVTPRFDSMFHRDGPTVQPRGHEASVSRD
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggcttgctttgacagtaataaagggagtttggaggaggacagctatgaaggagctgtt
ggtggagagctgtccggctgtgctttggcaatgctggaaaaagaatcccttctcagcccg
tcagagagccccggcaccttcatgagcagcacctcctctagtcttcaggcccctgccccc
cttcaaggctatgatgtggattttgacccacccctagagagtaaatacgagtgccctatc
tgccttatggctttgaggaatgccatccaaacaccctgtggtcaccgtttctgcaagaac
tgcattgagaaatcaattcgtgatacaggacagaggtgccctgtggacaatgaaaggctg
tcagaagaccagttgtttcctgataactttgccaaacgggagatactctcactaactgtc
cgctgtccaaactctggctgtgctgagaaaatggagctccgacatttagagaatcacttg
gcacagtgtcagtttgccacggtgccttgcccacagtgtcagcagtctgtgagaatgagc
cacctcgaggagcacaaaactgccgagtgccgacagagacctgtgtcatgtccagactgt
gtggcaagctttgtttatgaggagagagagcttcatgagcagcagtgtccctttgccaat
gtgaagtgccagtactgtgagatggatctcatcagagaccagatggagtctcactgtgat
acagattgcccaaaagcacccattgcctgtaactttagcaccttcggatgtaaggaaagg
atgcagcgccacaacttggctcagcatatgcaggagttcacgcagatgcacatgcgctac
atggctgagttcctgcgtggccttagcctcaacggcaccacacccaaatccctgtgggcg
ctaggaccttcagtctcctcggaggatcaaggagctgcagcatcagtttcagcctgtagc
gggcccagaggaggagctgcaagctgcagcagcaactctgccccgtctcagcccactgag
gagatgcagaggctcagggagatggatggacgattagtgaagcaggatcaccagctgcgt
gagctcatcatcttaaaagagacacaggctggccatctcgcagagatcaggcgtagagtg
tcaatgctggaggagacagtgaaggagctggaagcccagcaaagtcacggtatcttcatt
tggcgcctcagaggtttctctgctcacctgcggagccaggaagcaggcctcccagtggtt
gagcacagccccggcttctacacaggccgtccaggctacaagctgtgcctgcgcttgcac
ctgcagacccccaacgccccgcgctgctccaacttcatctctctctttgtccacaccatg
caaggagcttttgacgggctgctgagctggccgttccagggcaccatccgccttgccatc
cttgaccagggccccgagggtcagcaccacatggaggtgatggagactaaacccgacctg
caagccttccagaagcccaccatccagcgcaaccctaaaggatttggctatgtcaccttt
ctgcaccttcagcagctgagtcaaagagcctttattaaagatgacactctactcatccgc
tgcgaggtgacacctcgatttgacagtatgtttcaccgcgatggtccgacagtgcagccc
agaggacacgaggcctcagtttcaagggactaa
DBGET
integrated database retrieval system
