Eggerthella guodeyinii: GS424_004600
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Entry
GS424_004600 CDS
T07376
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
egd
Eggerthella guodeyinii
Pathway
egd03030
DNA replication
egd03410
Base excision repair
egd03420
Nucleotide excision repair
egd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
egd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GS424_004600 (ligA)
03410 Base excision repair
GS424_004600 (ligA)
03420 Nucleotide excision repair
GS424_004600 (ligA)
03430 Mismatch repair
GS424_004600 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
egd03032
]
GS424_004600 (ligA)
03400 DNA repair and recombination proteins [BR:
egd03400
]
GS424_004600 (ligA)
Enzymes [BR:
egd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GS424_004600 (ligA)
DNA replication proteins [BR:
egd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GS424_004600 (ligA)
DNA repair and recombination proteins [BR:
egd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GS424_004600 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GS424_004600 (ligA)
MMR (mismatch excision repair)
DNA ligase
GS424_004600 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GS424_004600 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
Prot_ATP_ID_OB_C
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QOS69126
UniProt:
A0A6L7ITY6
LinkDB
All DBs
Position
1146315..1148456
Genome browser
AA seq
713 aa
AA seq
DB search
MADEQQSLLDEQALAKATSDPAARIDALRREIEHHSYLYYANDAPSISDAAFDSLMRELR
ELEAAHPQLIDPSSPTQRVGGYVGEQFAPVRHERRMYSLDNAMDLEELDAWIERVAEAFG
RMVPVVCELKIDGSSIALTYEGGRLVRAATRGDGTTGEDVTANMRTVKDVPLRLRETALG
ELRDAEAPVELRGEVYMPKSSFDALNVAAEANGKQAFANPRNAAAGSLRQKDPAITANRD
LSTFIYAVADERALAVEGQWELLAWLREAGFHVNPDVELCETREAVHAFCERAIERREDL
PYEIDGVVVKVNAFVQQESMGYTARAPRWAIAFKFPPEEKTTLLRDITVQVGRTGKLTPV
AELEPVVVAGSTVARATLHNEDEVQRKDVRVGDTVIVRKAGDVIPEVLGPVLALRPDGAV
PWQMPSTCPSCGSPVIREEGEVDFRCISIDCPAQALERLLHWASRGAMDIDGMGEEIVSR
LVESGRLTDVADYYTLDEVELSLLDMGRVNKEGEPIRLGSTVAKKLVAAIDESRARPFAR
ALFGLGIRHVGKTIAELLAAAYPSIEALMEASEEDLAAIDGVGPKIARSAYLFLRTPDNA
AVIERLRKRGVALEDAAADAAEQLPQTLEGLTFVLTGSLVESGMTRDEAGAALKARGAKV
SGSVSKKTSFVVAGEAAGSKYDKAVTLGVPVLDEAALLRILATGEAPEPEAAS
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgaacagcaatccttgctcgacgagcaggcgctcgcgaaagcgaccagcgat
ccggccgcgcgcatcgacgcgctcaggcgcgagatcgagcaccacagctacctgtactac
gccaacgacgcgccgtccatctccgacgccgcgttcgactcgctcatgcgcgagctgcgc
gagctggaggcggcccatccccagctcatcgacccgtccagccccacgcaacgcgtcggc
ggctacgtgggcgagcagttcgcccccgtgcgccacgagcggcggatgtactcgctcgac
aacgccatggacctcgaggagctggacgcgtggatcgagcgcgtggcggaggcgttcggc
cgcatggtgcccgtggtgtgcgagctcaagatcgacggctcgtccatcgcgttgacgtac
gagggcgggcgcctcgtgcgcgcggcgacgcgcggcgacggcaccaccggcgaggacgtc
accgccaacatgcgcacggtgaaggacgtgccgctgcgcctgcgcgagacggccctcggc
gagctgcgggacgcggaggcgccggttgagctgcgcggcgaggtgtacatgccgaagtcc
agcttcgacgcgctcaacgttgccgccgaggccaatggcaagcaggcgttcgcgaacccg
cgcaatgccgcggccggcagcctgcgccagaaggaccccgccatcacggcgaaccgcgac
ctgtccacgttcatctacgcggtggccgacgagcgcgccctggcggtcgagggccagtgg
gagctgctggcgtggctgcgcgaagcgggcttccacgtgaaccccgacgtcgagctgtgc
gagacgcgcgaggcggtgcacgcgttctgcgagcgcgccatcgagcgccgcgaggatctg
ccctacgagatcgacggcgtggtggtgaaggtgaacgccttcgtgcagcaggagtcgatg
ggctacacggcccgcgcgccgcgctgggccatcgcgttcaagttcccgcccgaggagaag
acgacgctcctgcgcgacatcaccgtgcaggtggggcgcaccggcaagctgacgcccgtg
gccgagctcgagcccgtggtggtggccggctccaccgtggcccgcgcgacgctgcacaac
gaggacgaggtgcagcgcaaggacgtgcgcgtgggcgacaccgtcatcgtgcgcaaggcc
ggcgacgtcatccccgaggtgctggggcccgtgctggcgctgcgacccgacggtgccgtg
ccgtggcagatgccgagcacgtgcccgtcgtgcggctcgcccgtcatccgcgaggagggc
gaggtggacttccgctgcatctccatcgactgcccggcgcaagcgctggagcggctgctc
cattgggccagccgcggcgccatggacatcgacggcatgggcgaggagatcgtgtcgcgc
ctcgtggaaagcggccgtttgaccgacgtggccgactactacacgctggacgaggtggag
ctgtcgctgctcgacatgggccgcgtgaacaaggagggcgagcccatccgcctcgggtcc
accgtggcgaagaagctcgtggccgccatcgacgagagccgcgcgcgcccgttcgcccgc
gcgctgttcggcctcggcatccgccacgtgggcaagaccatcgccgagctgctggcggcg
gcctacccgtccatcgaggcgctcatggaggcctcggaggaggacctggccgccatcgac
ggcgtgggcccgaagatcgcgcgcagcgcgtacctgttcctgcgcacgcccgacaacgcg
gccgtcatcgagcggctgcgcaagcgcggcgtggcgctcgaggacgcggctgccgacgcg
gccgagcagctgccgcagacgctcgagggcctcacgttcgtgctgaccgggtcgctcgtg
gaaagcgggatgacccgcgacgaggcgggcgcggcgctcaaggcgcgcggtgcgaaggtg
tcgggcagcgtgtcgaagaagacgagcttcgtcgtggccggcgaggccgccggttccaag
tacgacaaggccgtgacgctcggcgtccccgtgctggacgaagccgccctgctgcgcatc
ttggcgacgggcgaggctcccgagcccgaagccgcgagctga
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