Duffyella gerundensis: EM595_1254
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Entry
EM595_1254 CDS
T04258
Symbol
ybjF
Name
(GenBank) putative RNA methyltransferase ybjF
KO
K03212
23S rRNA (uracil747-C5)-methyltransferase [EC:
2.1.1.189
]
Organism
ege
Duffyella gerundensis
Brite
KEGG Orthology (KO) [BR:
ege00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ege03009
]
EM595_1254 (ybjF)
Enzymes [BR:
ege01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.189 23S rRNA (uracil747-C5)-methyltransferase
EM595_1254 (ybjF)
Ribosome biogenesis [BR:
ege03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EM595_1254 (ybjF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
MTS
Methyltransf_31
Methyltransf_25
Methyltransf_15
Methyltransf_12
Cons_hypoth95
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
CUU23488
UniProt:
A0A0U5L2S2
LinkDB
All DBs
Position
1:1360972..1362099
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AA seq
375 aa
AA seq
DB search
MHCALYDANRCRSCQWLEKSYPQQIDDKQSLLQQLLADHPVAEWRAPVLSAQQAFRNKAK
MVVSGSVERPVLGLLHADGEAVDLIDCPLYPASFRTVFAALIPFIARAGLTPYHVARRRG
ELKFVLLTESTRGELMLRFVLRSEQKLTQLQAALPWLQAELPQLKVITANIQPVPMAILE
GKEEIFLTAQHALAEQLNDVPLSIRPQSFFQTNAPVAAQLYQTAREWVRALPVESMWDLF
CGVGGFGLHCATPQMRLTGIEISAEAIACAQQSAQAMGLHQVNFAALDSTQFATGNDSAP
QLVLVNPPRRGIGETLCQWLSEMAPPWILYSSCNARSMAEDIARLPDYAVQRVQLFDMFP
HTAHYEVLTLLERKS
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgcactgcgcgctttatgacgccaaccgctgtcgctcatgtcagtggctggaaaaatcc
tatccgcaacagatcgacgacaaacaatcgctgctgcaacagctgctggccgatcacccg
gtcgccgagtggcgcgcaccggtgctctccgcgcaacaggcgtttcgcaacaaagcgaaa
atggtggtcagcggcagcgttgagcgtccggtgcttgggctgttgcacgccgacggcgag
gcggtggatttaatcgactgcccgctctatcctgcgagtttccgcaccgtttttgctgcc
ctgatcccatttattgcccgtgccgggctgacgccttatcacgttgcgcgccgccgtggc
gaactgaaattcgtcttgctcaccgaaagcacgcgcggcgaactgatgctgcgctttgtg
ctgcgctcagaacagaagctgactcagctgcaggcggcgctgccgtggctacaggcggag
ctgccgcagcttaaggtgatcaccgccaatattcagccggtaccgatggcgattctcgaa
ggcaaagaggagatctttctcaccgcgcagcacgctctggcggaacagctgaacgatgtg
ccgctgtcgatccgcccgcagagttttttccagaccaacgcgccggtggctgcgcagctt
tatcaaactgcacgcgagtgggtgcgggcgctgccggttgagagcatgtgggatcttttt
tgtggggtaggcggttttggcctgcattgcgcgaccccgcagatgcggttgaccggcata
gagatcagcgctgaagcgatcgcctgcgcacagcagtcggcgcaggcgatgggattacac
caggtgaactttgccgcgctggattcgacgcagtttgccaccggcaatgacagcgcgcca
cagctggtgctggtcaatccgccacggcgtggcattggtgaaacgctgtgtcagtggctc
agcgagatggcgccgccgtggatcctctactcgagctgcaatgcacgcagcatggcggag
gatatcgcccgtttgccggattatgcggtgcagcgggtgcagctgttcgacatgtttccc
cataccgcgcactacgaagtgctgaccctgctggagcggaaaagctaa
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