Elizabethkingia ursingii: BBD34_15125
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Entry
BBD34_15125 CDS
T05036
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ego
Elizabethkingia ursingii
Pathway
ego03030
DNA replication
ego03410
Base excision repair
ego03420
Nucleotide excision repair
ego03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ego00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBD34_15125
03410 Base excision repair
BBD34_15125
03420 Nucleotide excision repair
BBD34_15125
03430 Mismatch repair
BBD34_15125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ego03032
]
BBD34_15125
03400 DNA repair and recombination proteins [BR:
ego03400
]
BBD34_15125
Enzymes [BR:
ego01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BBD34_15125
DNA replication proteins [BR:
ego03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BBD34_15125
DNA repair and recombination proteins [BR:
ego03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BBD34_15125
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBD34_15125
MMR (mismatch excision repair)
DNA ligase
BBD34_15125
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BBD34_15125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
HHH
RNA_lig_T4_1
5_3_exonuc
BRCT_2
Dna2
DUF7575
SpoOE-like
zf-IS66
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
AQX09877
UniProt:
A0AAJ3NCM2
LinkDB
All DBs
Position
complement(3327486..3329492)
Genome browser
AA seq
668 aa
AA seq
DB search
MSENIQQQIEELREELHQHNYNYYILDEPSISDFEFDAKLKELQDLEAQHPEFNDPNSPT
LRVGGGVTKNFPTVQHQFRMYSLDNSYDFNDLEDWEKRIIKTIDEPVEFVAELKYDGASI
SILYENGKLSQAVTRGDGFQGDEITSNVRTISDVPLKLKGEFPERFYMRGEIYLTRKNFD
KLNVLREEEGLDPFMNPRNTASGSLKMQDSGEVRKRGLSAVLYQYIAENFPAETHWDLLA
NAKQWGFRVSEDQAKLCRTLDDVKNFINYWDQERHNLPFEIDGIVIKVNSLKHQRELGYT
AKSPRWAMAYKFKAEKVETELLSVSYQVGRTGAITPVANLRPVLLAGTTVKRASLHNEDI
IKKLDLHENDFVYVEKGGEIIPKIVGVNTEKRTSESKEIEYIKHCPECGTELVKIEDQAI
HFCPNELHCPPQVVGRMIHYVSRKALNIENLGGETIEQLYREKLIENPADLYTLTKEQLL
PLERMAEKSAQNILDGVEKSKEIPFEKVLYGIGIKHVGETVAKKLVKNFPSIEELKNATE
EELCQVEDIGAKIAVSITEFFANQENLLMIERLKNYGVQLEKGENTNDVISNVLDGKAFL
FTGKLSLFTREQAEEMVEKHGGKNISAVSKNLNYLIVGEKAGSKLKKAQDIGTITILDEQ
QFLDLVNS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaaacattcaacaacaaatagaagagctaagagaagagcttcatcagcataat
tacaattactatattctggatgaaccttctatctcggattttgaattcgacgcaaaactg
aaggaacttcaggatctggaagctcagcatccagagttcaatgatcctaactcacctact
ttgcgtgttggcggaggtgtaaccaaaaactttcccactgtacaacaccagtttagaatg
tactctctggataattcatacgactttaatgatctggaagattgggagaaacgaattata
aaaaccattgacgagcccgtagagtttgttgcagaactaaaatatgatggtgcttctatt
tccattctttatgaaaacggaaaattatcacaggcagtaactcgtggagatggatttcag
ggtgatgagattacaagtaatgtaagaacgatttctgacgttccgttaaagctaaagggt
gaatttcctgaacgtttttatatgcgtggtgagatttatcttacccgtaagaactttgat
aaacttaatgtacttcgtgaggaagagggactcgatccctttatgaatccacgaaacaca
gctagtggaagccttaaaatgcaggactccggtgaggtaagaaaacgtggactttctgcg
gtactatatcaatatatcgctgagaattttcctgcagaaactcactgggatttattggca
aatgcaaagcaatggggcttcagagtttctgaagatcaggcaaaattatgcagaacgctg
gatgatgtaaaaaacttcatcaattactgggatcaggagagacataacctgccctttgaa
attgatggtattgtaataaaagttaattcactaaaacatcagcgtgaattaggttatact
gccaaatcaccacgttgggccatggcctataagtttaaggccgaaaaggtagaaactgaa
cttctgagtgtctcttatcaggtcggaagaactggtgcgattactcctgtagcaaacctt
cgtccggttttattagccggaactactgtaaaacgtgcatcactccataacgaggatatt
ataaaaaaattagacctacatgaaaacgattttgtttatgtagaaaaaggtggtgaaatc
atccctaaaattgtaggtgttaatactgagaaaaggacatctgaaagcaaagaaatagaa
tatataaagcattgtccggaatgtggtactgaacttgtaaaaatagaagatcaggctata
catttttgtccgaacgagctgcattgcccaccacaggtagttggaagaatgattcattat
gtttcccgtaaagccctgaatatagaaaatctgggtggtgaaactatagaacagctttat
cgtgaaaaactaattgagaatcctgcagatctttacactctaaccaaagaacaactactt
cctttagaacgtatggctgagaaatctgcacaaaacattttggatggtgtagaaaaatca
aaagaaataccttttgaaaaggtattgtacggaataggtataaagcatgtaggagaaact
gttgctaaaaagttggttaaaaacttcccaagtatagaagaattaaagaatgctaccgaa
gaagagctttgccaggtagaagatatcggtgcaaaaatcgctgtaagcattactgaattc
tttgcgaaccaggaaaaccttctgatgatagagcgtctgaaaaattatggtgtacaactg
gaaaaaggagaaaacaccaatgatgtcatcagcaatgttctggatggaaaagcttttctt
ttcaccggaaaattatctcttttcacaagagagcaggctgaagaaatggtagaaaaacat
ggtggcaaaaatatctctgcagtctctaaaaatctgaattatcttattgttggagaaaaa
gctggaagcaaactgaaaaaagctcaggatatcggaaccatcactattctggatgaacaa
caatttttagatcttgtcaatagctaa
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