Eucalyptus grandis (rose gum): 104415467
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Entry
104415467 CDS
T03547
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
104415467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104415467
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104415467
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
104415467
NCBI-ProteinID:
XP_010025063
UniProt:
A0A059B6A6
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Position
8:complement(61710998..61721090)
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AA seq
967 aa
AA seq
DB search
MGVPAFYRWLADRYPSSIADVVEDEPALDAGGAALPIDPSRPNPNGMEFDNLYLDMNGII
HPCFHPDGRRPPASYDDVFKAIFDYIDHVYSLVRPRKLLYLAIDGVAPRAKMNQQRSRRF
RAAKDAADAEAEEERLRKEFEAEGQILAPKEKPETCDSNVITPGTQFMAVLSVALQYYIQ
VRLNRYPGWQQTKVILSDANVPGEGEHKIMSYIRLQRNLRGFDPNTRHCLYGLDADLIML
SLATHEIHFSILREVVTFPGQQEKCFQCGQVGHLAADCRGKTADDMLNDIPIHKKKYQFL
NIWVLREYLQHDLDIANPPFEIDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLV
MVYKREFTAMGGYLTEAGEVMLDRVEHFIQSVAVYEDQIFQKRTRIQQALENNEEMRSRS
RRESSEELQSPAVDKVRLGEPGYKERYYAEKFHVSTPEEIERVKKETVLKYVEGLCWVCW
YYYQGVRSWQWYYPFHYAPFASDLKDLAGLEITFFLGEPFKPFDQLMGTLPSASASALPE
QYRKLMTDPSSPILDFYPSDFEVDMNGKKFAWQGIAKLPFIEEKKLLTETRKLEVYLTEE
EQLRNSVMFDLLYVHPFHPLSVQVYWYHQLSYQLGPYQRYPVPIDTNASGGMNGFLWLTE
RNVLSNVVRSPVCRLEDIVNNQVLNVTYLNPAKHEHIPRLPDGVDIPPKVLGPLDIKPFP
VLWHEDNYGRRHHGRERPSVPGAMVGPMLGEAAHRLVKSTLNIKSNNNQSSGILEPPRNR
NFQGYYPLNRPRPAGPSGYERGFSEDPXQYYGNHNYNQGMIGNSRYPPLSNGWQGSKQHV
RPMDRSQNQEQHRNLRNGMSALAVEESVRTKQNVPMLLRTPNPGHSSLTPDQAMQNVGPP
PPPPSKWIIKKAVAGNGVHRERQGAVTGGGSEKQVKMVYQVKTRVSNEMLGMENSSSSQN
ASDLPPP
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccgccttctaccggtggctcgccgatcggtacccgagctcgatcgccgac
gtcgtcgaggacgagccggccctcgacgccggcggcgccgccctgccgatcgacccctcg
aggcccaaccctaacgggatggagttcgacaacctgtacctcgacatgaacgggatcatc
catccgtgctttcaccccgacggcaggcgtcctcctgctagctacgatgacgtctttaag
gcaatatttgattatattgatcatgtctactcattggttcgtcctagaaagcttctttac
ctggcaattgatggagttgcaccaagagctaaaatgaaccaacagcgttctcggcgtttt
agggctgcaaaagatgcagctgatgcggaagctgaagaggaacggttgaggaaagaattt
gaggctgagggacaaatccttgctcccaaggaaaagccagaaacttgcgactcaaatgtc
attactcccggcacacaatttatggcagttctttctgtcgcacttcaatattatatacaa
gtgagattaaatcgttatcctggctggcagcagacaaaggttattctttctgatgcaaat
gttcctggggaaggagagcacaagattatgtcatatatacgattgcaaaggaatcttcgt
ggttttgatccgaacactcggcactgtctttatggcctggatgctgacctgattatgctt
tcgttagcaacacatgagattcacttttcaattctcagagaggtggtcacttttccagga
caacaggaaaaatgttttcagtgcggccaagttggtcacctggctgctgattgtcgtggc
aagactgctgatgatatgttaaacgatattcctatccacaagaagaaatatcagttcctc
aacatttgggtactccgggagtacttgcagcatgatctggacatagcaaatcctccgttc
gagattgatttcgaaaggatagtggatgattttgtatttttatgtttcttcgttggcaat
gacttccttccacatatgcctacattggagattagggagggtgcgatcaatttactagtg
atggtttataaaagggagttcactgccatgggaggttaccttactgaagcaggcgaggtc
atgttagacagagtagaacattttatccagtctgttgctgtctacgaagatcaaattttt
cagaagcgaactcgcatacagcaggcactggagaataatgaagaaatgagatctagatca
agaagagagtcatcagaagaattacaaagtccagctgttgacaaggttagattaggggag
cctggatacaaggaaaggtattatgcagagaaatttcatgtgtcaactccggaggagata
gagagagttaagaaggaaacggttttgaaatacgtcgaaggtttatgttgggtctgttgg
tattattaccaaggtgttcgatcctggcaatggtactatccattccattatgctccattt
gcttctgatctcaaggatttagctggtctggagatcacattcttcttgggagagcctttc
aaaccatttgatcagctcatgggaaccttaccatctgcaagtgcaagtgctctgccagaa
cagtacagaaaactgatgacggatccttcctcaccaatccttgacttttatccttcagat
tttgaggtcgacatgaatggaaagaaattcgcatggcagggtattgccaaactgccgttc
attgaagagaagaaattgctcactgaaacaaggaaactagaagtctatctaacagaggag
gagcaactacgaaatagtgtgatgttcgatttgctctatgttcatccattccatcctttg
tctgtacaagtttattggtaccaccaattaagctatcaattagggccatatcaaagatat
ccagtaccgattgacacgaatgctagtggtggaatgaatggattcctctggctaactgag
aggaatgtactgagcaatgtagttcgttcacctgtctgtagattagaggatattgtaaac
aatcaagtacttaatgttacttatctcaatcctgcaaagcacgagcacattcccagactg
cctgatggtgttgacattcctccaaaggttttaggacctttggatatcaagccatttcct
gtgttatggcatgaagataattacggcaggcgccaccatggaagagaaaggccatcagta
cctggagcaatggtcggtccaatgctgggagaagcagctcatcgtcttgtcaagagtaca
ctaaatatcaagtccaacaacaatcaatcctctggtattttggaaccaccacgcaatcgg
aactttcagggatattatccacttaatagaccgagaccagctggtccctctgggtacgaa
aggggcttcagtgaagatcccncccagtactatgggaatcacaactacaatcaaggcatg
attggtaattccagatatccgcctttatcaaatggttggcaaggaagcaaacagcatgtg
aggccaatggataggtctcaaaatcaagagcagcataggaatttgaggaatggaatgtct
gctttggcagtggaagaaagtgtcagaactaaacaaaatgtccctatgttactaaggacc
cccaatcccgggcattcttcactgacacccgaccaggctatgcaaaatgtgggcccaccg
ccacccccaccctccaaatggatcatcaagaaggcggtcgctggaaatggagtacacagg
gaacgacaaggagctgtcactggaggaggatcagagaagcaggtaaaaatggtctatcag
gtgaagacccgggtgtcaaacgagatgttgggtatggaaaactcgtcatcgagtcaaaac
gcaagtgatcttccacctccatga
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