Eucalyptus grandis (rose gum): 104438440
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Entry
104438440 CDS
T03547
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104438440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
egr03041
]
104438440
Spliceosome [BR:
egr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104438440
Complex C
U5 SnRNP specific factors
104438440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
Roc
Septin
BipA_C
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
104438440
NCBI-ProteinID:
XP_010049891
UniProt:
A0A059CWV5
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All DBs
Position
3:complement(70557605..70563669)
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AA seq
991 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDLESGGEEEEDEDLPDKRSEEPAESDGEDAGAGVGANGWIT
ASNDVDMENQVVLAEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVRNIKFEVGV
KDSSTYVSTQFLIGLMSNPALVRNVALVGHVHHGKTVFMDMLVEQTHHNSTFDVNNEKHM
RYTDTRIDEQERRISIKAIPMSLVLEDSNSKSYLCNIMDTPGHANFSDEMTAALWLADGA
VLIVDAAEGVLVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPKDAYHKLRHTIEII
NNHISAVSSIAGGVQVIDPVAGNVCFASATAGWSFTLQSFAKLYVKLHGIPFDADKFASR
LWGDYYYHPDTRVFRKKAPVSGGERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVT
LSNAAYKLNVRPLLRLACSSVFGSASGFTDMLVRHIPSAKDAASKKVEHIYTGPEDSMIY
KAMEKCDPSGPLMVNVTKLYPKSDCSVFDAFGRVYSGEIQTGQTLRVLGEGYSPDDEEDM
TVKEVTKLWIYQARYRIPIAKAPPGSWVLIEGVDASIMKTATLCNVDYDEDVYIFRPLQF
NTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMK
DLRELYSEVEVKVADPVVSFSETVVESSSMRCFAETPNKKNKITMVAEPLEKGLAEDIEN
GVVSIDWKKKELGEFFQKKYDWDLLAARSIWAFGPDKQGPNILLDDTLSSEVDKSLLNSV
KDSIVQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSSFLM
ATPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPSYTVKAFLPVIESFG
FETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKG
MSEDVSINKFFDEAMMVELAQHAADHQYQMI
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggacgatagcttgtacgacgagttcgggaactacatcggacccgaaatcgaatccgac
ctagagtccgggggcgaggaggaagaagatgaggacctcccggacaagcgcagcgaggag
ccggccgaatccgacggcgaggacgccggcgccggcgtcggcgcgaacgggtggatcacc
gcctccaacgacgtcgacatggagaatcaggtcgtcctcgccgaggacaagaagtattac
cccaccgccgaggaagtctacggcgaagacgtcgagacgctggtcatggacgaggacgag
cagcccctcgagcagccgattatcaagcccgtccggaacatcaagttcgaggtcggcgtg
aaggattcttccacttacgtgtcgacgcagttcctcatcggccttatgtcgaacccggct
ttggtccggaacgtcgcgctcgtggggcatgtgcatcacgggaagacggtgttcatggac
atgttggtcgagcaaacgcaccacaactccacatttgatgtcaacaatgagaagcacatg
aggtatacggatacgaggattgatgagcaggagaggaggatctcgattaaggccattccg
atgtcccttgtgctggaggatagtaattcgaaatcgtacctctgtaacatcatggacacg
cctgggcatgccaatttctctgatgaaatgacggctgctctttggctcgccgatggagct
gtgctgattgtggatgctgctgaaggggttttggtaaatacagaacgggccatccggcat
gctatccaagagcgccttcccatagttgttgtgattaacaaagttgacagactgataaca
gagcttaagttgccaccaaaggatgcttatcacaagctgaggcataccattgaaataatt
aacaaccacatttctgcagtgtcttcaattgctggaggtgtccaggtaatagacccggtg
gctggaaatgtttgttttgcaagtgcaacagcgggatggtccttcactttgcagtcattt
gctaaactatatgtcaaactccacggtatcccttttgatgccgataagtttgcttcccgt
ctttggggagattactactatcatccagataccagggtgtttaggaaaaaagctccagtt
agtggaggggagaggtcgtttgtccaatttgtgcttgagcccctgtacaagatatacagt
caagtaattggggagcataagaaaagtgtggaggcaactcttgcagaactaggggtcact
ctcagcaatgccgcttacaagttgaatgtgagacctttgcttcggctagcttgcagttca
gtttttggttcagcgtcaggttttacagatatgctggttcgacatattccatcagccaaa
gatgccgccagcaagaaggttgagcatatttacactgggcctgaagattcaatgatctac
aaggctatggaaaaatgtgatccctctggcccgctaatggtaaatgtcactaaattatat
ccaaagtctgattgcagcgtgtttgatgcatttggtagagtctatagtggtgagattcag
acaggtcagaccttacgtgttcttggagaaggctattccccggatgatgaagaggatatg
acagtgaaagaagtaacaaaattgtggatctatcaagctcgatatcggatacccatagcc
aaggcccctcctggttcatgggtcttaattgaaggagttgatgcttcaatcatgaaaact
gccaccctttgtaacgttgactatgatgaggatgtctacatattccggcctcttcagttc
aatacacttcctgttgttaaaacagctactgagcctctaaatcctagtgagcttccaaaa
atggtggagggtctcaggaagataagcaagagctatcctctggccatcacgaaagttgag
gagtctggggagcacactattttaggtactggagaattgtatctggattcaattatgaag
gatctgagagagctttactcggaggtggaagtgaaggtggccgaccctgttgtttcattc
tctgaaacagtggttgagtcttcatctatgagatgctttgctgagacacctaacaaaaag
aataagataacaatggttgcagagcctttggaaaaaggactcgctgaagatattgaaaat
ggagttgtcagcattgactggaaaaagaaggaacttggggaattctttcagaaaaaatat
gactgggatctgcttgctgcacggtccatatgggcgtttgggcctgataagcagggaccc
aatattttgttggatgacacattatccagtgaagtggataagagcttgctgaattctgtc
aaagattctattgttcagggatttcaatggggtgctcgggaagggcctttgtgtgatgaa
cccatcagaaatgtgaagttcaaaattgttgatgcgcggatagcacctgaaccattacat
cgtggatcagggcagatcattcctactgctcgacgtgtggcttattcttcatttctcatg
gcaactcctcgtctcatggagccagtatattatgtggagatacaaacaccaatagactgt
gtctctgcaatctacacggtgttatctcgaaggcgtggacatgtgacagctgatgtcccc
cagccagggaccccaagttacactgttaaggcatttttacccgtgatagagtcatttggt
tttgagacagacttgagatatcatactcaaggacaagcattttgcctatcggtctttgac
cactgggctatagttcctggtgatcctcttgacaagagcatagtcttgcggcctctggag
cctgccccaattcagcaccttgcacgagaattcatggtgaagaccaggcgtagaaagggt
atgagtgaggatgtcagtatcaacaaattctttgacgaggcaatgatggtggaattagct
cagcatgcagctgatcatcaatatcagatgatttga
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