KEGG   Eucalyptus grandis (rose gum): 104441805
Entry
104441805         CDS       T03547                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
egr  Eucalyptus grandis (rose gum)
Pathway
egr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:egr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    104441805
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:egr03021]
    104441805
Enzymes [BR:egr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     104441805
Transcription machinery [BR:egr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     104441805
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5
Other DBs
NCBI-GeneID: 104441805
NCBI-ProteinID: XP_010053343
UniProt: A0A059CGN4
LinkDB
Position
4:31012156..31031753
AA seq 1473 aa
MDNDFCEEQQVPSAVLTGVVFNVLSCREVEKISSITIESVGEVSDSRLGLPNSSGQCSTC
GAKDLKQCEGHFGSIKLPCTILHPYFLSEVAKLLNKICPGCKSVRQDLRVKKSGPGQVHH
GTRGCKYCLPTQVDYYPPMKFKVSSKDLFRRTAIIVEVDESFRNTQKKLNRRIWPSDYWD
FIPKNPEQEESSLKPNRRVLSHAQVYHLLNGVDPTFIRKFISRQDSLFLNCFPVTPNGHR
VTEATHAFSHGQRLVLDDRTRVYKKLVDFRGTANELGSRVLECLKVSKLNPDKLSNTESA
FAQNRKSRDLDFTSSGLRWMKDVVLGKRSDYCFRMVVTGNPNIKLSEIGVPCHIAERLQV
SETLNKWNCEKLNAVCSLLLLERGGMLVRRKGRLVRISHMKELLFGDTIYRPLSDGDMVL
VNRPPSIHQHSHLALSAKVLPIASALSINPLCCSPLRGDFDGDCIHGYIPQSVDARVELR
ELVGVDRQLYNGQSGRNLLSLGQDSLVAAHLILEDSVCFNRFDIQQLKMLCPNDLLPPVP
SVEGGMWTGKQLFQMLLPRGFEWFSSSNDIGISNGEIVFSEGSAWLRDADDNLFQRLITF
CQSRVLNILHAAQEVLCEWLSMRGFSVSLSDLYLASDSFSRENMIEEISCGLQEADETCN
IKQFMVDSSRDFLAGNGEEINAMAFNSERLCYEKQKSPALSQASVDAFKRVFRDIQSLAY
KYASKDNSMISMFKSGSKGNLLKIAQHSMCVGLQHSLVPLSFDIPHHLSNASYNSHKERN
IDRTHDFPFPQSFIPFAVVKNSFLSGLNPLECFVHSVTNRASSFSENAEVPGTLHRKLMF
FMRDLYVSYDGTVRSAYGNQLIEFSYGIEKQSSTPCSRKDSLSCENAKSGEGMGGQPVGS
MSACAISEAAYSALDQPISLLEMSPLLNLKNVLESGTKKSNSCQTMSLFLSKQLAKHRHG
LEYGALAVKDHLERMFFSDIVSTTMIIFSPENYNQNLSPWVCHFHIRKDIITRRGLILHS
VIGSLKRRCHAFLKELRVDLPPLQITINDCSLTGEEREDAANIFCITLTMVEESKKVATQ
PTLLKKLQEHVIPCLLETVIKGFMEIKKVDILWSESGKLSKSKPVSTGELYLRVSMSAHS
EKMKLWSVLMNNCVPIMDAIDWSRSHPDNIREFSLANGIDAGWKYFLNSLGSAVSDTGKT
VLPEHLVLLANCLSTSGEFVGLNPKGMSRQREISSVASPFVQACFSNPGPCFIKAAKAGT
VDSLQGSLDALAWGKVPSLGTGGLFEIIYSGKGHELAKPESVYNLLGNKVSSTQQNIKLE
VPNAGSHVPDTCGAEFVQADSVSKVLKKLEINKSLFRKFITFNDIQKLSLELKKILYKYP
IDHHLGEQEKSIVMMALKFHPRGKEKIGTGARNIKVGHHPKHQDSRCFMLVRDDGMAEDF
SYHKCVLGALEIIAPQRAKTYQSKWLKHEAEQT
NT seq 4422 nt   +upstreamnt  +downstreamnt
atggacaatgatttctgtgaggagcagcaagttccttctgctgttttgacaggagtagtc
ttcaatgttctaagttgcagagaagtggagaagatatcttcaataacaattgagtctgtc
ggtgaggtcagtgactctagattgggactcccaaactcctctggtcagtgctccacttgt
ggcgccaaagacttgaaacagtgtgaaggtcatttcggatctatcaagttgccatgtaca
atacttcacccgtattttctgtctgaagttgctaagttgctgaataagatttgcccaggt
tgtaaatctgttcggcaagatctacgggttaagaagagtggtccgggtcaggtacatcat
gggactaggggttgcaaatactgtctccctactcaagtagattattatccgcctatgaag
ttcaaagtgtcatctaaggatcttttcagaagaactgccatcattgtagaagtagatgaa
agttttcgaaatactcaaaagaagctaaacaggaggatttggccctctgattactgggac
tttatcccaaaaaatccggaacaagaagaaagttctctgaaaccaaacagaagggtatta
tcgcatgctcaggtttatcacttattgaatggcgttgatcctactttcattagaaagttt
atctcaagacaagattctctttttctcaactgtttccctgtaacaccaaatggtcatcgt
gtgactgaagccactcatgcattttctcatggacagcggctggtccttgatgaccgaacg
agggtatacaagaaacttgtcgattttagggggacagctaatgagttgggctcacgcgtc
cttgagtgtcttaaagtttctaagctgaacccagacaagttatcgaataccgaatctgct
tttgcccagaacagaaagagcagggacttggatttcacttcttctggtttgagatggatg
aaagatgttgttctcgggaagcggagtgattactgttttcggatggttgtgactggtaat
ccaaacatcaagctcagtgaaattggtgtaccgtgtcatatagcagagagattgcaagta
tctgagactttgaataagtggaactgcgaaaagttaaatgctgtctgcagtttactgctg
cttgaaagaggtggcatgcttgttcggagaaaagggcgtcttgtgcgtatcagtcacatg
aaagaacttctttttggagacactatatacaggccattaagtgacggagacatggttttg
gtaaataggcctccatctatacaccagcactctcatctcgcattatctgccaaggttcta
cccatagcctcagctctatctataaatccgctatgctgttcccctcttcgcggagatttt
gatggggactgcatccatggatatattccgcaatcggtggatgctagagtagagctaaga
gagctggttggtgtggataggcagttgtataatgggcaaagtggcaggaaccttctttct
cttggtcaggatagtctagttgctgctcacttgatattggaggatagtgtttgcttcaac
cgctttgatatccaacaacttaaaatgttgtgccccaatgatttgcttcctccggtacct
tcagtcgagggtggaatgtggactgggaagcaattattccagatgctcttgcctagagga
tttgagtggttttcgtcttcgaatgacattggaattagcaatggggaaattgtcttttca
gaaggatctgcttggcttcgagatgccgatgacaatctctttcagaggcttatcactttt
tgtcagagtagggtacttaacattttgcatgctgctcaagaagttctttgcgagtggttg
tccatgaggggttttagcgtttcattatcagatttgtaccttgcgtctgattcattctcg
cgggaaaatatgatcgaggaaattagttgtggtttgcaagaagcagatgaaacatgcaat
atcaaacagtttatggtggattcttcacgggacttcctcgctggaaatggtgaagaaata
aatgctatggccttcaattcagaacggttgtgttatgagaagcagaaatcccctgccctt
agtcaggcatctgtcgatgcttttaagcgagtctttcgagacatacaaagtttggcatac
aagtatgctagcaaggacaattccatgatttctatgtttaaatctggaagtaagggtaat
ctgctaaagattgctcaacacagtatgtgcgttggcctgcaacattctctagttccgtta
tcttttgatataccacatcatctttccaatgcttcttataatagccataaggaaaggaat
atagatcgtacgcatgattttccatttcctcagtctttcatcccatttgcagtagtcaag
aactcctttctttccggtttgaatccattagagtgtttcgtgcattctgtcacaaatcga
gctagttccttcagcgagaatgccgaagtccccggaaccttacaccggaagcttatgttt
ttcatgcgtgatctatatgtttcctatgatggcacagttagaagtgcttatggcaatcaa
ctcatagagttttcttatggcattgagaagcaatcatctactccctgcagccgcaaagac
agtctctcctgtgagaatgcaaaatctggggaagggatgggaggccaacctgttggttca
atgtctgcctgtgccatttctgaagctgcatatagtgctctagatcagccaatcagtctc
cttgaaatgtcgccactgttaaatttgaagaatgtgctggagtctggtaccaagaaaagc
aactcttgtcaaacaatgtcattatttctctctaagcagcttgcaaaacataggcatggt
ttagaatatggagcccttgcagttaaagatcatctggagagaatgttcttctcagacata
gtgtcaaccacaatgatcattttctccccagagaattataaccagaatttgagtccatgg
gtgtgccatttccatataagaaaggacattataacaaggagaggattaatacttcattct
gtcattggttctcttaagaggagatgtcatgctttcttgaaggaattaagagttgacctt
cccccactgcagataactatcaatgattgttcattaactggtgaagaaagggaagatgca
gctaatatcttttgcatcacactcaccatggttgaagaatcgaagaaagttgccacacag
cccactcttttgaaaaaacttcaagaacacgtgataccttgccttctggaaacagttatt
aaaggattcatggagattaagaaggtagatatcttatggagtgaaagcggcaagttaagc
aaatctaagcctgtgtcaactggtgaactgtacttgagagtatccatgtctgcacattct
gagaaaatgaagctctggagtgtactcatgaataattgtgttcctattatggatgctatt
gattggtctcgcagtcatccggataacattcgtgaattctcattagcaaatgggatagat
gctggatggaagtactttcttaatagtctgggttctgctgtatctgatacgggcaagact
gttcttcctgaacatttagttcttcttgcaaattgtctatcaacaagtggagagtttgta
ggcttaaatcctaaagggatgtcaagacaaagggaaatctcatctgtcgcatcacctttt
gttcaagcgtgcttttcgaaccctggtccttgttttattaaggctgccaaggcaggaaca
gtggatagtttacaagggagtctggatgcactggcatggggaaaagttccttcactgggg
acgggtggactatttgagataatatactctggcaaggggcatgagcttgcaaagcctgag
agtgtctacaatctgctgggtaacaaagttagttccacacaacagaatataaagcttgaa
gtgcctaatgctggcagccatgtgccagacacatgtggggcggagtttgtgcaggctgat
agtgtttctaaagtactcaagaaattggaaatcaataagtcattattcaggaaatttatc
acatttaatgacatccagaagctctcgctagagctgaaaaaaatattgtacaagtacccg
atcgatcaccatttaggtgaacaagaaaagtcgattgtgatgatggctctgaagtttcat
cctcgtggaaaggaaaagatcggaactggagctcggaatataaaggttggacatcacccc
aagcaccaagattctcgctgcttcatgctggtcagagacgatggaatggcagaagacttc
tcttatcacaagtgtgttctcggcgccctcgagataattgctccccaaagggcaaaaacc
taccaatcgaaatggttgaaacacgaggcggagcagacatag

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