Elaeis guineensis (African oil palm): 105036145
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Entry
105036145 CDS
T03921
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
105036145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105036145
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
105036145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Kbp-5
Motif
Other DBs
NCBI-GeneID:
105036145
NCBI-ProteinID:
XP_073115639
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Position
6:complement(77317307..77369256)
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AA seq
976 aa
AA seq
DB search
MGVPAFYRWLADRYPLAILDVIEEEPAEGEDGVLVPVDLIKPNPNGVEFDNLYLDMNGII
HPCFHPEGRPLPATYDDVFKSIFNYIDHLFWLVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RAAKDAADAEAEEQRLRKEFEAEEKNLTHNERPETSDSNVITPGTQFMAALSVALQYYLQ
LRLNRTPGWQSIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTHHCLYGLDADLIML
SLATHEVHFSILREVISMPGQQEKCFLCGQIGHFAADCKDKSGEQTSEDGKAVDDTPIYK
KKYQFLNIWILREYLENDLEIPDPPFEINFERLVDDFVFLCFFVGNDFLPHMPTFEIREG
AINLLMFVYKKEFAAMGGYLTDAGEVSLDRVEHFIQSVAIYEEQIFQKRARIQQAVENNE
ELKLKMQKETPENLQSMSLDKVKLGEPGYKERYYAEKFNIDEPKSIDDVRKDVVQKYVEG
LCWIMRYYYQGVCSWQWFYPYHYAPFASDLKGLADLEITFFLGQPFKPFDQLMGTLPAAS
SNALPEHYRALMTDPASPLSTFYPKDFEIDMNGKRYAWQGVAKLPFIDERRLLAETKKIE
YTLTEEEKSRNKIMFDIIYVHDSHPLAAQVVLLYQMCPLPAEEPLFFIQIDTSVSNGMNG
FLGLCERNHCNTSVPAPVKGLSSVEKNRVLNATYVNFQYHKHIPEPPEGVIMPAKVLKPQ
DIKPFPVLWHEDNNGRRQQARERPLLSGTLSGHVLGEAAHRLVKNSLQIKSNNTVRLLGA
PGRNAAQGVNKPRPAGPLGYERGFMEGKDYCRSSTYSPPSCNIQGFSNSRPFQFASDFQG
YSQNLRMQKSNFQDHGNISTGISNLTIEERPRFQSHPRMPNDRYWPNHQQHIQNAGPPPP
LPPINWIGKQTRGYMDGFGIRLPMNWTGKQPTRVYVGRSGRQEISTRSLYDKQQQISKVY
RIKSQTQEPTNSSNRQ
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccagccttttatagatggcttgccgatcgataccctctcgcgatcttggac
gtgatcgaggaggagcccgctgagggcgaggatggagtcctcgtccccgtcgatctcatt
aaacctaaccctaacggtgtcgaattcgacaatctttatctcgatatgaatggcatcata
catccctgtttccaccctgaaggaaggcctttgcctgccacatatgatgatgttttcaag
tctatttttaattatattgatcatcttttttggctggttcgccctagaaagctgttgtat
atggcaatagatggtgttgcacccagggctaaaatgaatcagcaacgatctcgacgtttt
agagctgcaaaagatgcagctgatgcggaagctgaagagcagagattgagaaaggaattt
gaggctgaagaaaaaaatttgactcataacgagagacctgaaacatctgactcaaatgtc
ataacaccagggactcagttcatggcagcactttcagttgcacttcaatattacttacaa
ttgagattgaatcgcactcctggatggcagtctattaaggttatcttgtccgatgcaaac
gttcctggagagggtgaacataagatcatgtcatacattcgcttacaacgaaatcttcct
ggttttgatccaaacacccaccactgtctttatggtttggatgcagatctaattatgctt
tctttggctacccatgaggtccacttctcaattttacgagaggtgatctccatgccagga
caacaagagaaatgctttctctgtggtcagattgggcattttgcagctgactgcaaagac
aagtctggtgaacaaacttctgaggatgggaaggccgtggatgataccccaatttacaaa
aagaaatatcagtttcttaacatctggattttgcgagagtacttggagaatgatttggaa
atacctgatcctccatttgagataaactttgaacggcttgtggatgattttgtctttctc
tgcttctttgtgggaaatgattttcttccccacatgccaacatttgaaattcgagagggt
gcgataaacctgcttatgtttgtttataaaaaggagtttgcagcaatgggtggttatctc
acagatgcgggtgaggtttcattggatagggtagagcatttcatccagtcggttgccatt
tatgaagaacaaatttttcaaaagcgtgctcgtattcagcaggcagttgaaaataatgaa
gagctaaagcttaaaatgcagaaagaaaccccagaaaatcttcagtctatgtccctagac
aaggtaaagttaggggaaccagggtacaaggaaaggtactatgctgagaaattcaatata
gatgaaccaaagtccattgatgatgtcagaaaagacgttgtccaaaaatatgtagaaggc
ctttgctggattatgagatattactaccaaggtgtctgctcttggcagtggttctaccca
tatcattatgccccttttgcatctgatctcaaaggattggcggatttggagataacattt
tttctgggtcaaccttttaagccatttgatcaactaatgggaacacttccagctgccagc
tcaaatgcattgcctgagcattacagggcattgatgactgatccagcatcacccttaagc
accttttatcccaaagattttgagatagacatgaatggtaaacgctatgcatggcaggga
gttgcaaaactgccattcattgatgagagacggttgcttgcagaaacaaaaaagatcgaa
tacactttaacggaagaagagaaatctcgaaataaaataatgtttgacataatttatgtc
cacgatagtcatccattggctgcacaagttgttttactctatcaaatgtgtccactacca
gcagaggagccattattttttattcaaattgacacaagtgttagtaatggaatgaatggg
ttcctgggtttatgtgagaggaaccactgtaacacatctgtacctgcaccggtcaaaggg
ttaagttctgttgaaaaaaacagagtcttgaatgcaacatatgttaattttcagtaccac
aagcacataccagaacctcctgaaggtgtgatcatgcctgcaaaggttttgaaacctcag
gacatcaaacctttccctgttttatggcatgaagacaataatggacgtcgtcagcaagct
agagagaggccactgctgtctggaaccctctctggccatgttttaggagaagcagcacat
cgtctggttaaaaattctttacaaatcaaatccaacaacactgtaaggttgcttggggca
ccaggtaggaatgctgcacaaggtgttaacaaacccagacctgctggaccattgggttat
gaaagaggtttcatggagggcaaagattattgtcggtcttctacctatagccctcctagc
tgtaacatacaaggtttctcaaattctaggccatttcagtttgcttctgatttccaagga
tatagtcagaacctaaggatgcagaagtcaaattttcaagaccatgggaacattagtaca
ggaatatctaatctgacaattgaagagaggccaagattccaatcacatccaaggatgcca
aatgatcgatactggcccaatcatcagcagcacatccagaatgcagggccaccaccaccg
ttgccgccaattaactggattggtaaacaaacaaggggttatatggatggatttggcata
cggctgcctatgaactggactggtaaacaaccaacaagggtttatgtgggtagatctggc
aggcaagagatatccaccagaagcctgtatgataagcagcagcagataagcaaggtatat
cgtattaaatcacagacacaggagccaacaaattcaagtaaccggcagtga
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