Elaeis guineensis (African oil palm): 105039319
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Entry
105039319 CDS
T03921
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
105039319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
egu03400
]
105039319
Enzymes [BR:
egu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105039319
DNA repair and recombination proteins [BR:
egu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
105039319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
mRNA_cap_enzyme
PapG_N
Motif
Other DBs
NCBI-GeneID:
105039319
NCBI-ProteinID:
XP_010913736
UniProt:
A0A6I9QR57
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All DBs
Position
1:complement(159328434..159352715)
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AA seq
922 aa
AA seq
DB search
MTDETVRFGVLGSMFEAMVRDRSAAKKRKRFRTLLDRVYTGRDYFSAVRLILPGLDRERG
SYGLKESALAAALVDALGLAKDSPDALRLINWRKGGARSGANAGNFALVAAEVLQRRQGM
ASGGLTIKELNDALDQIASKENRAEKTAVLASLIKKTNAQEMKWILMIILKDLKLGISEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLAMRVGDAATAW
RKLHGKHVVVECKFDGDRIQIHKNGEEIHFFSRNFLDHPEYEHGMSNIILQNITVERCIL
DGEMLVWDTSTQRFAEFGSNQEIAKAAREGLESDRQLCYVAFDILYVGDTSVIHQSLTER
LDLLRKVVKPLKGRLEILTPNGGLNDRRLQGEPCWSLVAYTVEDVERFFKETIENRDEGI
VLKDLGSKWEPGDRSGKWLKLKPDYIHAGADLDVLVIGGYFGSGRHGGEVAQFLVGLAVR
SDSTSYPNRFVSFCRVGTGLSDEELDALITKLKPYFRKNEYPKKVPPFYEVTNNSKERPD
VWIDSPDKSVILSITSDIRTIKSEVFAAPYSLRFPRIHRVRYDKPWHECLDVQSFVDLVH
SSNGNTQRGTDHGGLQNHGSKRVKSTKKGEKKNLSIVPAHLIHTDISGVKEETLIFANMM
FYFINVPPSYSVDYFHKIVVENGGTFSMNLNDSVTHCIAAERKGIKYQAAMHHGDIIHYS
WVLDCCKQKHLLHLQPKYYLFLADSSKSKFREEIDTFSDYYYWDIDIADIKQIFSNMHGP
EYTNNIDYYKKKYCPVETLCLFQGCCVYFYKSMSVINTCGEVILELALRRMRLEITMHGG
EVCSSLQHATHLIVYSTTKEANNFDEIYKSFPSSQRHLLHDSRLHVVMHQWLEDSLERGK
KLHEDSYNLKPDTFEEIKIDER
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgacagatgagacggtaagattcggggttctgggcagtatgttcgaggcgatggtgagg
gatcggtcggcggcgaagaaacggaagcggttcaggacgctgctggatcgggtgtacacg
gggcgggactactttagcgccgttcggctcatcctcccgggcctcgaccgggagcgcggc
tcgtacgggctcaaggagtccgccctcgctgccgcccttgtcgacgccctcggactggcc
aaggactctcccgacgccctccgccttatcaactggcgcaagggcggcgcccgttcgggt
gccaacgccggcaacttcgcccttgtcgccgccgaggttctacagcgtaggcaaggaatg
gcttctggtgggcttacaatcaaggagttgaatgatgctcttgatcaaatagcctcaaaa
gaaaatagggcagagaagactgctgttcttgctagtctcattaagaaaacaaatgcccag
gaaatgaagtggattctaatgatcattcttaaagatctgaagctggggattagtgagaag
agtatatttcatgagtttcacccagatgctgaagatttgttcaatgtcacttgtgaccta
aaattagtctgtgaaaagctgaaagatcgaagtcaacgtcataaacggcaggatatagaa
gtgggaaaagctgtaaggcctcagctagctatgagggtcggtgatgctgcaactgcatgg
aggaagcttcatggaaagcatgtggttgtcgagtgcaagtttgatggtgatcgcattcaa
atccacaagaacggagaagagattcactttttttcacggaattttctcgatcatcccgaa
tacgaacatggcatgtcgaacattattttacagaacatcactgttgagaggtgtattctg
gatggtgaaatgctcgtttgggacacctcaactcaacgttttgcagaatttggttcaaat
caggaaatagcaaaggcagctagagaaggattagagagtgaccgccagctatgctatgtt
gcatttgatattctttatgtcggagacactagtgttattcatcagagcttgacagaaaga
cttgaccttctgcgaaaagttgtaaaacctttgaagggtcgcttagaaattctgacccct
aatgggggtcttaatgatcgtcgtttgcaaggcgagccatgttggtcccttgttgcttac
actgtggaagatgtggagagatttttcaaagaaactattgaaaatagagatgaggggatt
gtgttgaaggaccttggttccaaatgggaacctggtgatcgaagtggaaagtggttgaag
ttgaaacctgattacatacatgctggtgctgatctggatgtgcttgtcataggaggatat
tttggttctggccgtcatggaggagaggtagctcagtttttggtgggtcttgcggtgcgt
tcagattctaccagctatccaaaccgatttgtttcattctgtcgagttggtactggtctc
tctgacgaggagcttgatgctctcattacgaaattgaagccttatttcaggaagaatgaa
tatccaaaaaaagtgccacccttttatgaagtcacaaataattcaaaggagaggccagat
gtttggattgacagccctgacaaatcggtcatactttctataactagcgatatccgaact
ataaagtctgaggtatttgccgcaccatacagtttgagatttccacgcattcatcgtgtg
agatatgacaagccatggcatgagtgccttgatgtgcagtcattcgtagacttggtacat
tcaagcaatgggaatacacagaggggaacagatcatggaggtctgcaaaatcatggatca
aaacgtgtgaagtccaccaagaagggagagaagaaaaatttatccattgtccctgctcat
ttgatccatactgacatctctggtgttaaggaggagaccctcatatttgcaaatatgatg
ttctattttatcaatgttcctccatcctattctgtagactactttcacaaaattgtggtt
gagaatgggggaactttctcaatgaatctcaatgactcagttactcactgcattgcagct
gaaagaaaagggatcaagtatcaagctgctatgcatcatggagatatcattcactattct
tgggtcttggattgttgcaaacaaaagcatcttctacatttgcaaccgaagtactaccta
tttcttgcagattcttcaaagagcaagtttcgggaggagattgacacgttctctgattat
tattactgggatatagatattgcagacattaaacagatattcagcaatatgcatggacca
gaatatacgaacaacatagattattataagaagaagtactgtccagtggaaacattgtgc
ttgtttcagggttgttgtgtttacttctacaaatcaatgtctgttataaatacatgcggt
gaagtaatattagagcttgctttaaggaggatgaggcttgaaataaccatgcatggtggt
gaagtttgcagcagtcttcaacatgccactcatttgattgtgtattcaacaacaaaagaa
gccaacaactttgatgaaatatataaaagttttccatcttctcaaagacacctactacat
gacagtaggctacatgttgtgatgcatcaatggttggaagattcattagaaagaggcaag
aagttgcacgaagattcttataacttgaagcctgatacctttgaagaaattaagattgat
gagaggtaa
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