Elaeis guineensis (African oil palm): 105042290
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Entry
105042290 CDS
T03921
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
105042290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105042290
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
105042290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
105042290
NCBI-ProteinID:
XP_010917728
UniProt:
A0A6I9QZM0
LinkDB
All DBs
Position
3:5843349..5875517
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AA seq
913 aa
AA seq
DB search
MGVPAFYRWLADRYPLTVADVIDEEPGVGADGLPLAVDPSRPNPNGVEFDNLYLDMNGII
HPCFHPEGRPSPATYDDVFRSIFAYIDHLFGLVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RAAKDAAEAAAEEERLRKEFEAEGRNLSPEQKPETSDSNVITPGTQFMAVLSVALQYYIQ
LRLNRTSGWQYIKVILSDANVPGEGEHKIMSYIRLQRNLPGYDPNTRHCLYGLDADLIML
SLATHEVHFSILREVILMPGQQEKCFLCGKIGHFAADCRGNADKQTSELQAVNDTPIHKK
KYQFLNIWVLREYLENDMQIPDSPFEINFERLVDDFVFLCFFVGNDFLPHMPTLEIREGA
IHLLMFVYRREFRAMGGYLTHAGEVSLDRVEHFIQAVAVYEEQIFKKRTRIQQAIKNNEE
QKLKLKGENPEDPLFVSPDKVKLGEPGYKERYYMEKFEVKESKSIDDVRRNVVQSYVEGL
CWIMRYYYQGVCSWQWFYPYHYAPFASDLRGLADVEITFFLGQPFRPFDQLMGTLPAASS
NALPKHYGALMTDPKSPLSSFYPDDFEIDMNGKRLAWQGIAKLPFIDERRLLAETKKLED
TLTEEEKFRNAMMCDILYVSINHSVASQIYTLYHICYQLSFQEAPITPIDAAVSDGMNGF
LCLRERNFYSIMVPAPVKGLSRLENNQVLNATYLNPTYHQHIPEPPEGVIIPEKVLKPQD
IKPFPVLWHEDNSSRHQGGRERSQLSVAASGPHLGAAAHRILRNTLQLKANNSGLLERPY
RNAPQAVYKPRPTGTLGHKRSFVQDLNYYHCSNHKPRDFPNSRSVQNFNEAECSRQNLRV
QERLNSQNQQQNIYVGMLNLRIEEQENCQQHPKMSDDEFWSNRQQLILNGPPLPSPPTNW
IRRQPVRDPSGRA
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccggcgttctataggtggctcgcggaccgctatcctctcacggtggcggac
gtgatcgacgaggagccgggagtcggcgccgatggcctccctctcgcggtggatccctcc
agacctaaccctaacggcgtcgaattcgacaatctctacctcgacatgaacggcatcatc
catccctgcttccaccccgaaggccggccttcacctgccacatatgacgatgtatttaga
tctatatttgcctacattgaccatctatttgggcttgttcgcccaagaaagctgctatac
atggcaatagatggtgttgctcccagggctaaaatgaatcaacagcgctctcggcgtttt
agagctgcaaaggatgcagctgaggcagccgctgaggaggaaagattgagaaaagagttt
gaggctgaaggaaggaatttgtcccctgagcaaaagcctgaaacatctgactcaaatgtt
atcactccagggactcagtttatggctgtgctctcagttgcgcttcagtattatatacaa
ttaagactgaaccggacttctggctggcaatatattaaggttatactctctgatgcgaat
gttcctggtgagggagaacacaaaatcatgtcctacatcagattacagcgtaatctgcct
ggttatgatccaaacacacggcactgtctatatggattggatgcagatctgatcatgctg
tctttggctactcatgaggttcacttctcaattttaagagaggtgatcttgatgcctgga
cagcaggagaaatgttttctctgtggcaaaattgggcattttgctgctgattgtagaggt
aatgctgataaacaaacttcagagttgcaggctgtgaatgacaccccaattcacaaaaag
aaatatcagttccttaatatctgggttttgcgagagtacttggagaatgacatgcaaatt
cctgattctccttttgagataaactttgagcggcttgtggatgattttgtctttttatgt
ttctttgttggaaatgattttctcccacatatgcccactttggaaatccgtgagggtgca
attcatctactaatgtttgtttataggagagagtttagagctatgggtggatatctcaca
catgcaggggaggtttcattggaccgagttgaacattttatccaagcagttgcagtttat
gaagagcaaatttttaagaagcgtactcgtattcaacaggcaattaaaaataatgaagag
cagaagcttaagttgaagggagagaatcctgaggatcctctatttgtgtctccagacaag
gtaaaattaggagaacctggatataaagaaaggtactacatggagaaatttgaagtaaaa
gagtctaagtcaattgatgatgtcaggagaaatgttgtccagagctatgtagaaggcctt
tgctggatcatgcgatattactatcaaggtgtctgttcatggcagtggttctacccatac
cattatgctccatttgcatctgatcttagaggcttggctgatgtggaaatcacctttttc
ttgggacagccatttagaccatttgatcagctaatgggaacactccctgctgctagttca
aatgcattgcccaagcattatggagcattgatgacagatccaaaatcacctttaagctcc
ttttatcctgatgattttgaaatagacatgaatggtaaacgccttgcatggcagggcatt
gctaagttgccattcattgatgaaaggcgtctgcttgctgagacgaagaagcttgaggat
acgttgacggaagaagaaaagtttcggaacgcaatgatgtgtgatatactttatgtttcc
ataaatcattctgtggcttcacaaatttatacactatatcacatatgctatcagctttct
tttcaagaggcaccaattactccgatagatgcagctgttagtgatggaatgaatggattc
ctttgtctgcgtgagaggaacttttacagcataatggtacctgcgccagtgaaaggtttg
agcagacttgaaaataaccaagttttgaatgccacgtatcttaatcctacataccaccaa
catattccagaacctcctgaaggtgtgatcatacctgaaaaggttttgaaacctcaagac
attaaaccattccctgtgttatggcatgaagacaacagtagtcgacatcaaggtggcaga
gagaggtcacagctgtctgtagctgcgtcaggtccacacctaggtgcagcggcccatcgt
atcctcagaaatacactacagctgaaggccaacaactcaggattgcttgagagaccctac
aggaatgcccctcaggcagtttacaagcctaggccaactggaaccttagggcacaagaga
agctttgtccaagacctgaactattaccactgctcaaatcacaagcccagagattttcca
aattcgcggtcagttcagaacttcaatgaagctgaatgcagcaggcagaacctcagagta
caggaaaggttgaattctcaaaatcagcagcagaatatatatgtagggatgttaaatttg
agaattgaagagcaggaaaattgccaacaacatccaaagatgtcagatgacgagttctgg
tcaaatcggcagcagcttatcctaaatggacctccattgccttcgcctcctacaaactgg
atccgtaggcaacctgtaagagacccctcaggtcgagcatga
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