Elaeis guineensis (African oil palm): 105043828
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Entry
105043828 CDS
T03921
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
egu
Elaeis guineensis (African oil palm)
Pathway
egu04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
egu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
105043828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egu03019
]
105043828
Messenger RNA biogenesis [BR:
egu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
105043828
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
105043828
NCBI-ProteinID:
XP_019705687
UniProt:
A0A6J0PI01
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Position
4:13028765..13042592
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AA seq
918 aa
AA seq
DB search
MGIPAFYRWLVDRYPLSVVPVVEEFPKVVNGVLVPIDSSSPNPNGVEFDNLYLDMNGIIH
PCFHPEDQPAPNSYEEVYKAVFKYIDHIFYMIRPRKLLYMAIDGVAPRAKMNQQRARRFR
AAKDLADAAAEIEKLKDELGSEIEKLTQSKNTSKLDSNVITPGTEFMASLSVALQYYIYL
RLNNDPGWRGIKVILSDANVPGEGEHKIASYIRVQRNLPGFDPNTRHCLYGLDADLIMLA
LATHELHFSILREDVRVARNHEKVKKIGISGKEERKELNWDVNNDMPIKKFQFLNIWVLR
EYLAHDLRISDAPLKIDLERLIDDFVFICLFVGNDFLPHVPSLEISEGAIDLLMMVYKKE
FARMGGYLTNSFKVDLERVEHFLQIVGSHESAIFRRRSQVQKEREIQFGAISTMMGIEQN
KASSLMRKSTNFFSKNLLSSKKSDFVIDDQVKLGEEGWKERYYAEKFEVKTDDNREKLKR
HSVLKYVEGICWVMHYYYQGVCSWQWFYPYHYAPFASDFLDLKHLEIHFTLGVPFKPFDQ
LMGVLPAASAHALPLSYRNLMTDPSSAIIDFYPADFELDLNGKRFSWQAVCKLPFVEESR
LLAELKKVEHTLTDEEKQRNSWKLDMLFVHISHPLASTIISVHSRKKDHPKLSKAKVKRK
IDPEISGGMNGAMYISDKSVCSFEIYSPLGGMETITKNKTLFVYYKVPPIQEHIPRLPKG
AILPKKSITKQDMQPAPVLWHERTALRRRIYFERPISNSIAGPHLSKMARQLVSNYYHEK
KQRSDAHELDDHAMDDSCHRKQRNVEQKINHETNSKHSLLGKRKRRVRNDRSRKILGQNC
EISFNNNSSLGKRKRRVRGRRRKKIAEQERTRNQEHKSNNSRSGKRKCKENSRRKKTAEE
KNHGGNGNNGNIQENTKR
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggggattcccgctttctatcgttggctcgtggatagataccccctctcggtggtgccg
gttgtagaagaatttcccaaggtcgtcaatggcgtcctagtccctatagatagcagcagt
ccgaaccctaatggcgtggagttcgataacctctatctcgacatgaacggtatcatccat
ccttgtttccatccggaagaccagcccgctcctaattcgtatgaagaagtttacaaggcg
gtgtttaagtacatagatcacatcttctacatgatccggccgcggaagcttctttacatg
gcaatcgatggggttgcgccgcgagcaaagatgaatcagcaacgagcaaggagatttagg
gctgctaaagatttggctgatgctgcggcagaaatagagaagctaaaagatgagttgggc
tcagaaattgaaaaactaacgcaatcaaagaacactagcaaactggattcaaacgttata
acacccggaactgagttcatggcctctttgtcggtggcccttcagtactacatttactta
agattgaacaatgatcctggatggcggggcatcaaggtcatcctatctgatgccaatgtg
ccgggtgaaggcgagcacaaaatagcgtcatatatccgagtacagaggaacctgcctgga
tttgaccctaacacaagacattgcttgtatgggttggatgctgacttgatcatgcttgca
ctggcaacacatgaattacatttctctattcttagagaggatgttcgtgtggcacgcaat
catgaaaaagttaaaaaaattggtatttctggtaaagaagagaggaaggagttgaattgg
gatgttaataatgacatgccaataaaaaaattccagttcctcaacatttgggttctgaga
gaatacttggcgcacgacttgagaatatctgatgcaccactgaagatagatctggagcgc
ttgattgatgattttgtcttcatttgtttgtttgttggcaatgattttcttccccacgtc
ccatcacttgaaatttctgagggtgcaattgatctgctaatgatggtgtataaaaaggag
ttcgctagaatgggtggttatttgaccaactcttttaaggttgatttggaacgtgttgag
cacttcttacaaatagttggatctcacgaaagtgccatcttcagaagacgtagccaggta
cagaaggaaagagagattcagtttggagccatttcaactatgatggggattgaacagaac
aaagcatctagcttgatgagaaaatccacaaatttcttcagtaaaaacctattaagtagt
aaaaagtctgattttgttattgatgatcaggtaaagttgggagaagaagggtggaaggaa
agatactatgcagagaagtttgaagtcaagactgatgacaaccgtgagaaacttaaaaga
cattcggtcttgaaatatgttgaagggatctgctgggtcatgcactattactaccaagga
gtctgctcctggcaatggttttatccatatcattatgctccatttgcttcagattttctt
gatttgaaacacttggaaattcacttcacacttggggttccattcaagccatttgaccaa
ttaatgggtgtactgcctgcagcaagcgcacatgcactgccattgtcttacaggaatttg
atgactgatccatcgtcagccataattgatttttatccagcagattttgagcttgacttg
aatggcaagcgtttctcctggcaggctgtctgtaaactaccatttgttgaggaatcccgc
cttcttgcagaactcaaaaaagtggaacataccttaacagatgaagagaagcaaaggaac
agctggaagttggatatgctatttgttcacatttcacatccgctagcatcaacaattatt
tctgttcacagccggaaaaaagatcacccaaaattatctaaggccaaagtcaaaaggaaa
attgatccagaaataagtggtggaatgaatggagccatgtacatttctgataaatctgtt
tgctcatttgaaatctattcacctcttggaggtatggagaccataaccaagaataaaacg
ctatttgtctattacaaggtcccaccaattcaggaacacatccccagattgccaaaagga
gcgatcttacctaaaaagtcaattaccaaacaagatatgcaaccagccccagtattgtgg
catgagagaacagcattacgccggcgtatctattttgaaagacctatttctaattccata
gctggccctcacttgtcaaaaatggctcgccagcttgtatcaaattattatcatgaaaag
aagcaacgaagcgatgctcatgaacttgatgaccatgctatggatgattcatgtcacagg
aaacagaggaacgtagaacaaaagatcaaccatgagacaaacagcaagcacagtcttcta
gggaaaaggaaacgcagggttcgcaatgacaggagtagaaagattttaggacagaactgt
gaaatcagtttcaataataatagcagcctagggaaaaggaaacgcagagttcgtggccgc
aggaggaagaagatcgcagaacaagagagaactcggaaccaggagcacaaaagcaacaat
agcagatcagggaaaaggaaatgcaaagagaactcccgcaggaagaagacagcagaagag
aaaaatcatggaggtaacggtaataatggcaacatacaagaaaatacaaagcggtag
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