Enterococcus gilvus: EGCR1_06180
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Entry
EGCR1_06180 CDS
T05664
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
egv
Enterococcus gilvus
Pathway
egv03030
DNA replication
egv03410
Base excision repair
egv03420
Nucleotide excision repair
egv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
egv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EGCR1_06180
03410 Base excision repair
EGCR1_06180
03420 Nucleotide excision repair
EGCR1_06180
03430 Mismatch repair
EGCR1_06180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
egv03032
]
EGCR1_06180
03400 DNA repair and recombination proteins [BR:
egv03400
]
EGCR1_06180
Enzymes [BR:
egv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EGCR1_06180
DNA replication proteins [BR:
egv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EGCR1_06180
DNA repair and recombination proteins [BR:
egv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EGCR1_06180
NER (nucleotide excision repair)
GGR (global genome repair) factors
EGCR1_06180
MMR (mismatch excision repair)
DNA ligase
EGCR1_06180
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EGCR1_06180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
BRCT_2
5_3_exonuc
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AXG39797
LinkDB
All DBs
Position
complement(1274587..1276605)
Genome browser
AA seq
672 aa
AA seq
DB search
MTFQAAEKRSAELRDELNQYSYEYYVQDQPSVEDFVYDKKYQELVEIETEYPDLITPESP
TQRVGGKILEGFEKVVHDIPLYSLNDVFNKEELIAFDERVKKAVGHPVSYCVELKIDGLS
ISLKYENGVFVQGATRGDGTVGENITENLKTVKSIPLRLKEPLSIEVRGECYMPKASFVK
LNQQREEEGKEVFANPRNAAAGSLRQLDTRVAAKRNLSTFLYTLADFGPLESTTQDHALN
EMSRLGFRTNPEHRVCETIDEVWEYIENFHETREQLDYEIDGIVIKVNDFSIQDDLGFTV
KAPRWATAYKFPPEEAQTTLLDIDWTIGRTGVLTPTAIMAPVRLAGTTVGRASLHNSDYI
EKKDIRLKDTILVYKAGDIIPEVSRVILDKRPSDSEPYPIPTHCPICGSELVHLDEEVAL
RCINPKCPAQIKEGLSHFVSRNAMNIEGLGPRVLAQMFDKGLVSDVADLYSLEKEQLLTL
EKIKDKSAENILQAIDASRENSVERLIFGLGIRHVGSKAAGILAEHFGSLEGVSQATKEE
IVGLNTIGETIADSLVTYFENEEVHELMQELKDRHVNLEYKGIRASQLAEVESPFKDKTI
VLTGKLVDYTREDAKEKIQLLGGKVTGSVSKKTDIVVAGEEAGSKLTKAQNLGIDIWDEK
QMIQAIEESHTD
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgacttttcaagcagcggaaaaacgttcagccgaacttcgagatgaactaaatcagtat
tcctatgaatattatgtacaagatcaaccctcagtggaggattttgtttacgataagaaa
tatcaagaacttgttgaaatcgagactgaatatcctgaccttatcaccccagaatcccct
acacaacgcgtgggcgggaaaattttagaaggatttgaaaaagtggtacacgatattcct
ctatacagtttgaatgatgttttcaataaggaagaattgatcgcctttgatgaacgtgtg
aaaaaagcagtgggacatccggtttcctattgtgtggaattaaaaatagacgggttatcg
atctcattgaaatatgagaatggcgtgtttgttcaaggggctactcgtggtgatggcact
gtgggcgagaatatcactgaaaatttaaaaacggtcaagtccattcccctacgtctgaaa
gaacccttgtccattgaggttcgtggggaatgttatatgcctaaagcctcttttgtcaaa
ctcaatcagcaacgagaagaggaaggaaaagaagtatttgccaatcctcgaaacgctgct
gctggaagcttacggcaattagacactcgtgtcgcagccaaaagaaatttgagtaccttt
ttatacacactggcagattttggtccattagaatcaacaacgcaggatcatgcgctcaat
gagatgtctcgcttaggattccgaacaaatcctgagcaccgtgtctgtgagaccattgat
gaggtttgggaatacattgagaacttccacgaaacaagagagcagctggattatgaaatt
gacggtatcgtcatcaaagtgaacgattttagcattcaagatgatctaggttttacggtg
aaggcaccacgttgggcaacggcctacaagtttccaccagaggaagcacagacaacattg
ttggacattgattggacgattggtcggacgggtgtgctgacacctacagcaattatggcg
ccggttcgtctagccggcaccactgttggccgggccagtcttcataatagtgattatatc
gagaagaaagatatacgattaaaggacactattttagtatacaaagcaggggatattatc
cctgaggtttctcgggtgattctggacaaacggccatctgacagtgaaccctacccgatt
ccgacgcactgtccgatctgcggcagtgaactggttcatttagatgaggaagttgctcta
cgatgtatcaatccaaaatgtcccgcacaaatcaaagaggggctcagccattttgtgtct
cggaatgcgatgaatattgaaggattagggcctcgcgtgttagcacaaatgtttgataaa
gggttggtttcagacgtcgccgacctctattctttagagaaagagcagttactcacatta
gagaagatcaaagataaatctgcagagaatatcctacaggccattgacgccagccgtgaa
aattcagtggaacgtttaatttttggcttaggaattcgccatgttggctcaaaagccgcg
ggtatattggcagagcattttggcagtcttgaaggtgtcagtcaagcgacgaaagaagaa
attgttggactgaatacgattggagaaacgatcgcggacagtttagtgacgtactttgag
aacgaagaagtacatgaattgatgcaagagctgaaagatcggcatgtaaaccttgagtac
aaaggcatccgtgctagccaattagcagaagtggagtctccatttaaagataaaacgatc
gtgctcactggaaaactcgtagactacacaagggaagatgcaaaggaaaagattcaactg
ctcggtggaaaagttactggcagtgtatctaaaaaaacagatatcgtggtagcaggggaa
gaagccggaagcaagctgacgaaagcacaaaatcttggaattgacatttgggatgagaaa
caaatgattcaagcaatcgaagaaagtcatacagattaa
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integrated database retrieval system
