Egretta garzetta (little egret): 104125220
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Entry
104125220 CDS
T05152
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
egz
Egretta garzetta (little egret)
Brite
KEGG Orthology (KO) [BR:
egz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
egz03036
]
104125220 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
egz03400
]
104125220 (SMCHD1)
Chromosome and associated proteins [BR:
egz03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
104125220 (SMCHD1)
DNA repair and recombination proteins [BR:
egz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
104125220 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Big_1
Sec2p
Motif
Other DBs
NCBI-GeneID:
104125220
NCBI-ProteinID:
XP_009635938
LinkDB
All DBs
Position
Unknown
AA seq
1988 aa
AA seq
DB search
MCNIAFEESGTAKQNLAFGIATDENFVITTTNRKEITEDNFSELVQDGVTLYLLQSVDQM
LLSATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSQNTGIRSIQ
IKLLFDDSQGKPAVTVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPR
SLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGY
IRNRKPSDSTHITSDDERFLHNLILEERDKESFTAVVITGVQPDHMQYLKNYFHLWTRQL
AHIYHYYIHGPKGNETNAVTKDISPFNNIDIQISMFEKGKVPKIVNLREIKDDMQTLYIN
TAADSFEFKAHVEGEGIVEGIIRYHPFLYDKETYPDDPCFPSKLNDDDDDDDDCFIVEKG
ARGKRPIFECFWNGRLIPYTTVEDFDWCAPPKKRGLAPVECYNRISGALFTNDKFQVSTN
KLTFMDLELKLKDKNTLFTRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGVTT
RTDLPSKRMQSPWAMYAAIEWDGKTYKTGQLVKTVKTLPIFYGSIEKFFLYGDHDGDIYA
TGGEVQIALEPQALYAEMKTIPISKLDRTVSDKAVKKYIEDEMARLPDKLSVTWPEGDEL
LPNETRFAGTPIGALRIVILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTGNKEIIS
HISQHGGKWPYWFKKMENLQKLGNYTLKLQVVLNESNADTYAGRPLPSKIFKFTIIEGKP
EKFSVGLLELPFRVGVPFNIPLELQDEFGHATQLTTDIKPILEASGLTLQHEEITTGTKC
IIKGVTAKGCINSCQGKNFNLKVTLPGLKEDTQIVKIRLQPGPPCQLKVKPDSEILKIEN
GTAFPFQVEVLDESGNITAQPKLIVHCKFLGASNLPVYSVDCSNGGTNILTGPVIHVQNI
KKDQMLKARIEILSCKDVPPVEKVIKLLPSSHVARLQVLSMDGQKAIQIKHQDEINWVAG
DIMHNLIFQMYDEGEREIHITPAVAEKIKVNWTPRINREQLIQGLLPDVKVPTSVKDVRY
CLITYLDDHVSLESAFTVRPLPDEPKHIKCKLKGPNTLQMGEELQGEIDVMITDQYGNQV
QTVTSACINSLGVSGPGLDKSNLKITWQESTLTMRVKGIRFKPCLLGSKELCFAWREFSD
FLRVTLTAGSPAKLQFVDWPELEKPVAVINGRELQKPLIVQLCDQWGNPTPEPNVKISLT
KDNNLKIVPSNQQHKTDENGRANLGIISIHAPRGEHTLQIRASYNKIMLDCPIITLNVLP
DPEKPVRLNVKYDKNASFPAGGTFPDFMVSVLSEDDNIIKNINPARISMKMWEAQSSGTR
IPIDVTTFSCSKVKDDKEDGFFYFRDKVVPERVGTYSIQFTFAMDKTNMLSSDQIIVEVV
PNDPVRLLPDSLPATPAVSNVRALTSRTLVKDLYLHVMDKYNNHTGIDLVGRIIAKIKSP
NEDDTEIPQFQGKVSTIEFPFDRGSAEINLVLAENSPGRDSTEYILVFEPDLPALKKPLE
PYRLSFMFYNDFKKQQQMATLTRERDQLSQSIGVYRSWFDTTNQLVTEIKCQVKEAETRE
TQLKNELKKHQIELPQTHTLQYVDSLIKQKMLDQEGVMKQPRRTCTLPNYPKGNQDILGK
IAHLAQIEDNEAAKVISWHLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLP
DWNRPLPHLRNGKIFFRPIGNPVFARDLLTFPDNVEHCQTVFGMLLGDTIIIDNLDAANH
YRKEVVKITHCPTLLTREGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTFSGQ
IDLLQQYRAAVVKLDNVNKDLDLHLQSLNTPEALKKKQELAEQEKSLKLIEQKLGMTPSD
KVTESLLQPIMLDMSDTPIPPKRMRRETVKKLYSSEEWLYSPAKKQQQQQPLQIHPSEFN
GTPRKRKA
NT seq
5967 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaacatagcatttgaagagtctggcactgcaaagcagaacctggcatttggcata
gctactgatgaaaactttgttatcaccacaacaaacaggaaggaaattacagaagacaac
ttcagcgaacttgttcaagatggagttactttatatctgctacagtcagttgatcaaatg
ctgctttcggcaaccaaggagcgaatcgacttcctgccccactacgatactcttgtcaaa
agtgggatgtatgagtactatgccagcgaagggcaaaatcctttgccatttgcccttgct
gagttgattgacaattctttatcagctacatcccaaaatactggtattcggagcatacag
ataaaattgttatttgatgactcccaaggaaaaccagcggttactgtgattgataatgga
agaggaatgacttctaaacagctgaataactgggccgtatatagactgtcaaagtttaca
agacaaggtgacttcgagagtgatcattcaggatatgtacgccctttgccagtgcctcgt
agtttaaatagtgatatctcatattttggagttggaggcaaacaagcagtgttcttcgtt
ggacagtctgccagaatgataagcaaacctgcagattctcaggatgttcatgaacttgtc
ctttctaaagaggattttgaaaagaaggagaaaaacaaggaagcaatatatagtggatac
attcgaaacaggaagccatctgactctactcacatcacaagtgatgatgaaagatttctt
cataatctaatattagaagaaagggataaagagagtttcacagcagttgtcattacaggt
gtacaaccagatcacatgcagtacttgaaaaactactttcatctttggacaaggcagctg
gcacatatctatcactattatatccatggaccaaaaggaaatgaaactaatgctgtaaca
aaagacataagccctttcaacaacattgacattcagatttcaatgtttgaaaaagggaaa
gtaccaaagattgtcaatcttagagagatcaaagatgacatgcagacactgtatataaat
actgcagcagatagttttgagtttaaggcacatgttgaaggagaaggtatagtggaaggc
atcatccgataccatccttttctgtatgataaagaaacataccctgatgatccatgtttt
ccatcaaaattaaatgacgacgacgatgatgatgatgactgctttatagtagaaaagggt
gccagaggaaaaaggcctatttttgaatgtttttggaatggaagattaataccatacaca
actgtggaagattttgactggtgcgctcctccaaagaagagaggattagcaccagttgaa
tgctacaacagaatttctggtgcattatttaccaatgataagttccaggtcagtacaaac
aaactcactttcatggatctggagctgaagctaaaagataagaatactctgttcacgaga
atcttcaatggacaggagcagcgaatgaaaattgacagagaatttgctttgtggctcaaa
gactgtcatgaaaaatatgacaaacagataaaattcacagtctttaaaggagtaactaca
cgtactgatttaccatccaaaagaatgcagagcccttgggcaatgtacgctgcaatagag
tgggatgggaaaacatataaaactggacagctggtgaaaaccgttaagactcttccaata
ttctatggaagtattgagaaattttttttgtatggagaccatgatggggatatatatgcc
actggaggagaggttcaaattgctttggaacctcaggccttgtatgctgaaatgaaaact
attccaatatcaaaacttgacagaacagtgtctgacaaagctgttaaaaaatacatagag
gatgaaatggcaaggcttcctgacaaattatcagtaacatggcctgaaggagatgagtta
ttaccaaatgaaacaagatttgctggtacaccaataggagcgttaagaatagtaattttg
aataaaaaaggagaagcaatgcaaaaacttccgggtacaagccatggaggttcaaagaaa
cttcttgttgaactcaaggttattttacattcacctactgggaataaagaaataatttcc
catatcagtcagcatggaggcaaatggccatactggtttaaaaaaatggaaaaccttcag
aaacttgggaactacaccttgaaactgcaagtagtattgaatgaaagtaatgcagacact
tacgcaggaaggcctctaccatctaaaatatttaaatttactattatagagggcaaacca
gagaaattttcagtgggtcttttggagcttccttttcgagttggagtaccttttaatatt
cctttggaattgcaggatgaatttggtcatgcaacacagttgacaactgacattaaacca
attcttgaagctagtggattgacattgcagcatgaagaaataactacaggaacaaagtgc
atcattaaaggtgtcactgctaaaggctgtataaatagttgccagggcaagaactttaat
ctgaaggttactcttcctggtttgaaagaagacacacaaatcgttaaaataagattgcag
cctggccctccttgtcaattgaaagtaaaaccagattctgaaattctaaagattgaaaat
ggtacagctttcccctttcaggttgaagtactggatgaatcgggaaatataacagcacag
ccaaagttgatagttcattgtaagtttttaggtgcttcaaaccttcctgtgtattctgtg
gactgtagtaatggaggaacaaacattttaactggtccagttatacatgtacagaatatc
aagaaagaccaaatgctgaaagcaaggattgaaatacttagttgtaaagatgtgccacca
gtggaaaaggttattaaacttcttcctagcagtcacgttgcaagactacaggtcttgagt
atggatggacaaaaagctattcaaattaaacatcaggatgaaataaattgggttgctggc
gatatcatgcacaacctcatatttcagatgtatgatgaaggagaaagggagatacacata
actccagctgtggcagaaaaaatcaaggttaactggacacctagaattaacagagaacag
ttaattcagggattattacctgatgtaaaggtaccaacatcagtaaaagatgtacgttac
tgtctaattacttaccttgatgaccatgtgtctttggagagtgcattcacagtcagaccg
cttcctgatgaacccaaacacattaaatgtaaattaaaaggaccaaatacactgcagatg
ggtgaagaactacaaggtgaaattgatgtaatgattacagatcagtatggaaatcaggtt
cagacagtgacatctgcgtgtataaattccctaggagtttctgggcctggacttgataaa
tcaaatttgaaaataacttggcaggaaagtactctaacaatgagagtaaaaggtattcgg
tttaaaccttgtttacttggaagcaaagaactgtgcttcgcttggcgtgaattttctgac
tttctcagagtaactttaactgcaggatcccctgctaaattgcagtttgtggattggcca
gagttagaaaagcctgttgctgtgattaatggtagagaattgcagaagccccttattgtt
caactgtgcgatcagtggggaaatccaactcctgaacctaacgtcaaaatcagccttaca
aaggataacaacttgaagattgttccttcaaaccagcaacataaaacagatgaaaatggt
agggctaacctgggaattattagtatccatgcacctaggggagagcacactttacaaatt
agagcctcatacaacaagatcatgttagattgtcctataatcacattaaatgtcctgcct
gatcctgagaaacctgtccgcttgaacgttaaatatgacaaaaatgcttcttttccagca
ggaggtaccttccctgattttatggttagtgttctttctgaagatgacaacattattaaa
aatattaatccagcacggatttctatgaaaatgtgggaagcacagagcagcggaactagg
ataccaattgatgttacaacatttagctgtagtaaagtgaaggatgataaggaagatggc
ttcttttacttcagagataaagtggttccagagagagtgggcacttacagtatccagttt
acctttgcaatggataagacaaatatgctcagcagtgaccagattatagttgaagttgta
cctaatgaccctgtacgcttgttacctgattctttaccagctactccagcagtttccaat
gttcgagctcttactagccgtacactggtcaaggatttatacctccatgtaatggataag
tacaacaaccacactggaatcgatctagttggcagaataatagcaaaaattaagagcccc
aatgaagatgatacagagatcccacagtttcaggggaaagtcagtacaattgagtttcca
tttgacagaggatcagctgaaattaatctagtgctggctgaaaacagtcctggaagagat
agcactgaatatattcttgtatttgagccagatctgccagctttgaaaaaacctttggaa
ccataccgtctgtcatttatgttttacaatgatttcaagaagcagcaacagatggcaaca
cttacaagggagagagaccagttatctcaatccataggtgtttacagaagttggttcgat
actactaatcagcttgtaactgaaataaaatgtcaggttaaagaagctgaaacaagagaa
actcagctgaagaacgaactgaaaaaacaccagattgaattaccacagacacacacactt
cagtatgtggattctcttataaaacaaaagatgttggatcaagaaggagtaatgaaacag
ccaaggcgaacatgtacccttccaaactatccaaaaggcaaccaggatattttaggcaag
attgcacatttagcacaaattgaagataatgaagcagcaaaagttatctcttggcatttg
gcaagcgacatggactgtgtagtcacactgactactgaagctgctcgttctatttttgat
gaaactcaaggtcgacaacaagtgctaccccttgattctatttacaagaagacactccct
gattggaacaggcctttacctcacttaagaaatggaaaaatcttcttcagacctattgga
aatcctgtatttgccagagatctgttaacatttccagataatgtagagcattgtcaaaca
gtgtttgggatgctcttgggtgacactatcattatagataacttggatgctgccaaccat
tacagaaaagaggttgtaaaaattacacattgccctactttgctgactagggaaggagac
aggattcgcagcaatggaaaatttggaggtcttcagaataaagctcctccaatggacaaa
ctcagaggaatggtatttggagcacccatgccaaaactttactctactttctctggacag
atagatcttcttcagcagtaccgtgcagcagtggtgaaacttgataacgtgaataaggac
cttgatttacatttgcagtcacttaacactccagaagcgctgaagaaaaaacaggaactt
gccgaacaagagaaaagtctcaagctaatagaacaaaaattgggtatgactccatcagat
aaagtcactgaatcactacttcagcctataatgttagatatgtctgacacccccattccc
cccaaaagaatgcgaagagaaacagtaaaaaaattgtatagctcagaagaatggctctac
tctcccgcaaagaagcagcaacaacagcaaccactgcaaatacacccttcagaatttaat
gggactcctcgaaagagaaaggcatag
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