Egretta garzetta (little egret): 104129965
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Entry
104129965 CDS
T05152
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
egz
Egretta garzetta (little egret)
Pathway
egz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
egz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104129965 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
egz03400
]
104129965 (LIG4)
Enzymes [BR:
egz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104129965 (LIG4)
DNA repair and recombination proteins [BR:
egz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104129965 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
104129965
NCBI-ProteinID:
XP_009641244
UniProt:
A0A091JI15
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MASAPASQPSKKTVASHVPFADLCSTLERIQTCKSRPEKTKYFKDFLDSWRKFHDALHQK
EKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKGGKDAAKLLNYRTPA
GSRGEAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGLLKKSLLQLIT
QSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSLS
DVSITLFSAFKPMLAAIADVQQIEKQMNNQMFYIETKLDGERMQMHKDGDVYKYFSRNGF
DYTQQFGPSPLDGSLTPFVHGVFKSNIQNCILDGEMMAYNPETQTFMQKGNRFDIKRMVE
DSDLQTCFCVFDVLMVNDQKLGHEVLSRRYEILSSVFTPITGRMHVVQKKSARTRKEVID
ALNEAIDNREEGIMVKDPTSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSR
GGMMSHFLCAIAETPPPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYNRKDPPC
NILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWHECMTL
DMLEDLRSKAEGKLASKHLHIDEYDEPQEKKRKTVSKVKKIIGIAEQFKAPDLSNVSKVS
NVFEDVEFCVMTGMGKCSKSELESKIAECGGSVVQNPGPETYCVIVGAENVRVKNIIASN
KYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFARQYDCYGDSYTADTDVAQLKE
VFSRMKDNTVMPLDTIAELEERYSWNACQLSMFRGNTVYVDCYAVVNEPRTKIHGTTLSI
RALELRFYGAKVVPLLEEGISHVVIGEDHSRVKEVKALRRTFRKKFKIVSELWVTESVEE
GVPKNENQYLI
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgcacctgcttctcagccttctaaaaaaacggtggcctctcacgtccctttt
gccgacctgtgctctactctggagcgaatacagacgtgtaagtctcgtccggagaaaacc
aagtatttcaaggatttcctggattcctggagaaaattccatgatgctcttcatcaaaaa
gagaaagacgtcacggattctttttacccagcgatgcgacttattcttccacagttggaa
agagaaaggatggcgtatggaattaaagagactatgcttgcgaagctgtatattgaactg
cttaatttaccgaaaggtgggaaagatgctgcaaagcttttaaattacaggacgcctgct
ggctcacgtggagaagctggagattttgcaatgattgcatactttgtgttaaagcctcgg
agcccgaaacaaggcaggctgacaatagagcaagtcaatgaacacttagatgcgatagca
aataacaacgctgctaaaaacaagggtctgttgaagaaaagccttcttcagttgattacc
cagagcacagcactggaacaaaaatggctcattcggatgattataaaggatctaaagctt
ggtgttagtcaacaaactatattttccatttttcatcctgatgctgctgaattacacaac
gtcacaactgatctggaaaaagtttgcaggcaactgcacgatccctctgtctctcttagc
gatgtttctatcacgttgttttctgcctttaaaccaatgctcgctgctattgctgacgtc
cagcaaattgagaaacaaatgaataaccagatgttctacatagaaactaagctggatggt
gaacgtatgcagatgcacaaagatggagacgtgtataaatatttttcccgaaatggattt
gactatactcagcagtttgggccttcccctcttgatggttcgttaacgccattcgtccat
ggcgtatttaagagcaatatacaaaattgcattctcgatggggaaatgatggcttacaat
cccgagacgcaaacctttatgcagaaaggaaacagatttgacataaaaagaatggtggag
gactctgatctgcagacatgcttctgtgtgtttgatgtattgatggttaacgatcagaag
ttgggtcacgaagtactaagcagaaggtacgaaatcttaagcagcgtatttaccccgata
acaggcaggatgcatgttgtacagaaaaagagtgccagaacgagaaaagaagtaattgat
gctttaaatgaagcaatagataacagagaggaagggattatggtgaaagatcccacgtcc
acctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatacgtcaat
gggctgatggatgaactagaccttttaattgttggtggttactggggaaagggctcacgt
ggtggaatgatgtctcattttctgtgcgctattgcagagacgccccctccaaatgaaaaa
ccgactgttttccactctatttgccgtgttggctctggctatactatgaaggaattgtat
gatttaggtttgaagctggctaagcactggaagccctacaataggaaggatcctccctgt
aacattttgtgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtcata
gttcagatcaaggcagccgagattgttaacagtgatatgtacaaaacggactgtactttg
agattcccccgaattgagaagataagagaggacaaagaatggcatgagtgcatgacttta
gacatgttagaagatctcagaagcaaagcggaagggaagctggcatctaagcaccttcac
atagatgagtatgatgagccacaagagaaaaaaaggaaaactgtatcaaaggtgaagaag
ataattggaatagctgagcaatttaaagctcccgatctttctaatgtaagcaaggtttca
aatgtgtttgaagatgttgagttttgtgttatgacaggaatgggaaaatgctcgaagtcg
gaactggaaagcaaaatagctgaatgtggcggcagcgtggtacagaacccagggccggag
acttactgtgtcattgtaggagctgagaacgtccgagtgaaaaacatcattgcttccaac
aagtatgacgtggtgagggcagagtggctccttcagtgttttcaaaccaagatgctggtg
ccttggcagccagcctttatgattcacatgtctcctgacacgaaagaacattttgctcgt
cagtacgattgctatggagacagctacacagcagacacggacgttgcacaactcaaggaa
gtgttctcgagaatgaaggacaatacggtgatgcctttggacacgattgcagagttagaa
gaacgttattcatggaacgcttgtcagctcagtatgttcagaggaaacactgtttatgtg
gactgttacgctgttgttaatgagcccagaaccaaaatccatggaacaacactatcaatt
agagctttggagctccgtttttatggtgcaaaagtagtccctctccttgaagagggcatc
tcccatgttgttataggagaagatcattcgcgggtaaaagaggtgaaagcactcaggaga
acatttaggaaaaaatttaaaattgtatctgagctgtgggtaacggagtcagtggaggaa
ggagtcccaaagaatgaaaatcagtacttaatttaa
DBGET
integrated database retrieval system
