Empedobacter haloabium: E7V67_015525
Help
Entry
E7V67_015525 CDS
T09755
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ehb
Empedobacter haloabium
Pathway
ehb03030
DNA replication
ehb03410
Base excision repair
ehb03420
Nucleotide excision repair
ehb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ehb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E7V67_015525 (ligA)
03410 Base excision repair
E7V67_015525 (ligA)
03420 Nucleotide excision repair
E7V67_015525 (ligA)
03430 Mismatch repair
E7V67_015525 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ehb03032
]
E7V67_015525 (ligA)
03400 DNA repair and recombination proteins [BR:
ehb03400
]
E7V67_015525 (ligA)
Enzymes [BR:
ehb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E7V67_015525 (ligA)
DNA replication proteins [BR:
ehb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E7V67_015525 (ligA)
DNA repair and recombination proteins [BR:
ehb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E7V67_015525 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E7V67_015525 (ligA)
MMR (mismatch excision repair)
DNA ligase
E7V67_015525 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E7V67_015525 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WUR11129
LinkDB
All DBs
Position
complement(3565917..3568250)
Genome browser
AA seq
777 aa
AA seq
DB search
MTTQTPAERAAWLTAELNRHLHAYHVLDAPTIPDAEYDKLFIELQQIEAAHPELVAPDSP
TMRVGAPPLGQFEAVTHAVPMLSLNNGFTDEDIENFDRRVREGLDAMEVEYAAEVKFDGL
AINLRYENGVFVQAATRGDGYTGEDVSANIRTIRAIPLRLHGDDLPAVLEVRGEVLMFKA
DFNAMNERQRAAGQKEFVNPRNAAAGALRQLDSRITAERKLRFFAYGIGELVGAELPQTH
SALLDWYEKLGLPVAKERAVVRGKDGLLDYYARIGQGRPAMPYEIDGVVYKTNRLADQRA
LGFVSRAPRFALAHKFPAEEALTTVQAIEVQVGRTGAITPVARLVPVFVGGVTVTNATLH
NEDEVRRKDVRVGDTVIVRRAGDVIPEVLAVVLERRPTPEPAPYVLPNTCPVCGSHVVRE
EGEAVARCSGGLTCAAQRKEAIRHFAGRRMMDIEGLGDRYIDSLVECNLVHGVADLYSLT
LDDLLQMKRMADERDGTTPETVKQGKVATKWADNLLQAIESSKRPPLERLLFALGIRHVG
ESTAKTLADWLGRFELVRQAPAALLRVLPDIGGTVAESIADFFAEEKNQQAIDALLAAGV
TPQGEHAPKAQLREKLDPVQLLAALAIPKLTEPRARQLLEQAGTFETLASRRTFDVYGLP
ATVAGALEEWMAVPAQREALLQLDRLRADLLAQLPETAAAEGHLSGKTFVLTGTLPTMSR
DAAGALIEAAGGKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVTILDEAGLLALLGK
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgcagacccccgccgaacgcgcggcctggctgacggcggagctgaaccgccac
ctgcacgcctaccacgtgctggacgcgccgacgattccggacgccgaatacgacaagctg
ttcatcgagctgcagcagatcgaggcggcccatccggaactggtggcgcccgattcgccg
acgatgcgcgtgggcgcgccgccgctggggcagttcgaagcggtcacgcacgcggtgccg
atgctgtcgctgaacaacggcttcacggacgaggacatcgagaacttcgaccgccgcgtg
cgcgaagggctcgacgcgatggaagtggaatacgcggccgaagtgaaattcgacggcctg
gcgatcaacctgcgctacgagaacggcgtgttcgtgcaggccgccacgcgcggcgacggc
tacacgggcgaggacgtgtcggccaacatccgcaccatccgcgccatcccgctgcgcctg
catggcgacgatttgccggcggtgctggaggtgcgcggcgaggtgctgatgttcaaggcc
gatttcaacgcgatgaacgagcgccagcgcgccgccggccagaaggaattcgtcaatccg
cgcaacgcggcggccggcgcgctgcgccagctcgactcgcgcatcaccgccgagcgcaag
ctgcgcttcttcgcctacggcatcggcgaactggtgggcgcggagctgccccaaacgcac
agcgccctgctggactggtacgaaaagcttggcctgccggtggcgaaggagcgcgcggtc
gtgcgcggcaaggacggcctgctggactactacgccaggatcggccagggccgcccggcg
atgccgtacgagatcgacggcgtggtctacaagaccaatcggctggccgaccagcgcgcg
ctggggttcgtctcgcgcgcgccgcgcttcgcactggcccataaattcccggccgaggag
gcgctgacgacggtgcaggccatcgaggtgcaggtgggccgcaccggcgcgatcacgccg
gtggcacggctggtgccggtgttcgtcggcggcgtgaccgtcaccaatgccacgctgcac
aacgaggacgaggtgcgccgcaaggacgtgcgcgtgggcgacaccgtgatcgtgcggcgc
gccggcgacgtgattccggaggtgctggcggtggtgctggaacggcgcccgacgcccgag
ccggcgccgtacgtgttgcccaatacctgcccggtgtgcggttcgcacgtggtgcgcgag
gaaggcgaggcggtggcgcgctgctccggcggcctgacctgcgcggcgcagcgcaaggag
gcgatccgccacttcgccggccggcgcatgatggacatcgaaggtctgggcgaccgctac
atcgacagcctggtcgaatgcaacctggtgcacggcgtggccgacctctatagcttgacc
ctggacgacctgctgcagatgaagcgcatggccgacgaacgcgacggcaccacgccggaa
acggtcaagcagggcaaggtcgcgaccaagtgggccgacaacctgctgcaggcgatcgag
tccagcaagcggccgccattggagcggctgctgttcgcgctgggcattcgccacgtgggc
gagtcgaccgccaagacgctggccgactggctgggccgcttcgagctggtgcggcaggcg
ccggcagcgctgctgcgggtgctgccggacatcggcggcacggtggccgaatcgatcgcc
gacttctttgccgaggagaagaaccagcaggccatcgacgcgctgctggcggccggcgtg
acgccgcagggcgagcacgcgccgaaggcgcagctgcgcgagaagctggacccggtccag
ctgctggcggcgctggcgatcccgaaactgacggagccgcgcgcccgccaattgctcgag
caggcaggcacgttcgaaacgctggcgagtcgccgcacgttcgatgtgtatggcctgccg
gccacggtggcgggcgcgctggaggaatggatggccgtgccggcgcagcgcgaggcgctg
cttcagctggaccgcctgcgcgccgacctgctggcccagttgccggaaacggcggcagcc
gaaggtcacctgagcggcaagaccttcgtgctgacgggcaccttgccgaccatgagccgc
gacgcggccggcgcgctgatcgaggcggcgggcggcaaggtgtcgggttccgtgtcgaag
aagacgtcgtacgtggtggcgggcgccgaggcaggcagcaagctggccaaggcggaagag
ctgggcgtgacgatcctggacgaggcgggcctgctggcgctgctgggcaagtaa
DBGET
integrated database retrieval system
