Ehrlichia japonica: EHF_0257
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Entry
EHF_0257 CDS
T03078
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ehh
Ehrlichia japonica
Pathway
ehh03030
DNA replication
ehh03410
Base excision repair
ehh03420
Nucleotide excision repair
ehh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ehh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EHF_0257 (ligA)
03410 Base excision repair
EHF_0257 (ligA)
03420 Nucleotide excision repair
EHF_0257 (ligA)
03430 Mismatch repair
EHF_0257 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ehh03032
]
EHF_0257 (ligA)
03400 DNA repair and recombination proteins [BR:
ehh03400
]
EHF_0257 (ligA)
Enzymes [BR:
ehh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EHF_0257 (ligA)
DNA replication proteins [BR:
ehh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EHF_0257 (ligA)
DNA repair and recombination proteins [BR:
ehh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EHF_0257 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EHF_0257 (ligA)
MMR (mismatch excision repair)
DNA ligase
EHF_0257 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EHF_0257 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
SAS4
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AHX04829
UniProt:
X5H1W1
LinkDB
All DBs
Position
complement(273860..275890)
Genome browser
AA seq
676 aa
AA seq
DB search
MVKQEEAKLELEKLNKQIQRHDILYHVQDNPEISDAEYDELCRKRNLILKAFPRLVSSNG
YQDNVGSSPDIRFAKVKHEEKMLSLDNAFNQQDVEKFITRTKKLLNMNDDQSISMSCELK
IDGLSFSVIYRKGEISQASTRGDGYFGENITNNVKIIKNLPHIIHNAPDLLEVRGEIYIN
RSDFIQLNNDGNNFANPRNAAAGSVRQLDYNITAQRKLKYFMYTIVNTTCVTQEELLDQL
KTWGFCVNEHTITTSNIEKAFNFYNQVYNNRSNINYDIDGIIYKINDIKSQHILGNTSKS
PRWAIAYKFPAAEAKTQLKKISIQIGRTGVLTPIAELSPINIGGVVVTRASLHNKNEIER
KDIREGDYVIVKRAGDVIPQVVDVDKNLRTQELTKFAFPTTCPSCGSSLYQAKQEASIYC
TGELFCKDQVLEKIKHFVSKDAFNIIGFGKKQLLFFYEQGFITSIVDIFRLEEKISNSDF
KLESLHGWGERSISNLFSAINNSKVISLENFIFALGIRFVGKYIAKILAKYFSSYEKWYN
EMLKLAQDENYLLNIQQIGSKTISSLKMFFTEQHNLNMINDLVKYLTITDTNSTSYLSLI
HGKTIVFTGELSSMSRSEAKVRSEAAGAKVSSSLSKNTDFLIIGNNPGSKYKKAQSLNIQ
ILTEDLWLQYTEQNES
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggtcaagcaagaagaagctaagctagagttagagaaattaaataaacaaatacagcgt
catgatattctttatcatgtacaagataatccagaaataagtgatgctgagtatgatgag
ttatgtcgtaaaagaaatctaatccttaaagcttttccaagacttgtatcaagtaacggt
taccaagataatgtaggtagttctccggatataaggtttgccaaagttaaacatgaagag
aagatgctctccttagataatgcctttaatcagcaagatgtagagaaatttataacaaga
actaaaaagctcttaaatatgaatgatgatcaatcaatatccatgtcttgtgaattaaaa
atcgatggactatcattctccgttatatatagaaaaggagaaatttctcaagcatctacg
agaggcgatggatattttggcgagaatattacgaacaatgttaaaattataaaaaatcta
ccacacattattcacaacgcaccagatctcctagaagtaagaggggaaatatacataaat
cgcagtgattttatacaacttaataatgatggaaataactttgcaaatccacgtaatgct
gcagctgggtccgtaagacaattagactataatattactgctcaacgcaaattaaaatat
tttatgtacacaatagtcaacactacatgtgtaacacaagaagaactactagaccaatta
aaaacttggggtttttgtgtaaatgaacatactattactacaagcaatattgaaaaagct
tttaacttttacaatcaagtttataacaatagaagcaacatcaattatgatattgatggt
ataatatacaaaatcaatgatataaaatcacaacatattctcggaaacacaagtaaatca
ccaagatgggctatagcttataaattccctgctgcagaagcaaaaactcaactaaaaaaa
atttctatacaaattgggagaactggtgtactaacacccattgcagaactttctcccata
aatattggtggggttgtagttacaagagcaagtttacataataaaaatgaaatagagcgt
aaagatatacgtgaaggtgactacgtcattgtcaaaagagcaggagatgtaatacctcaa
gtagttgatgtagacaaaaacctaagaactcaagaattaacaaaatttgcttttccaaca
acatgtccatcatgtggtagcagtttataccaggcaaaacaagaagcatcaatatattgt
accggagaattattttgtaaagaccaagtcttagaaaaaataaagcattttgtttcaaaa
gatgctttcaacattataggatttgggaaaaaacaattattatttttttatgagcaagga
ttcataacaagcattgttgatatatttagattagaagaaaaaataagtaatagcgatttt
aaattagagtcattacatggatggggtgagagatccataagtaatttattctctgcaata
aacaacagcaaagtaattagtttagaaaactttattttcgcattaggaatcaggtttgta
ggaaaatatatagcaaaaatactcgccaaatatttctcatcatatgaaaaatggtataat
gaaatgcttaaactcgcgcaggatgaaaattatttactcaatatacaacaaataggatcc
aaaactataagttcgctaaaaatgttttttactgaacaacataacttaaatatgattaat
gatttggtaaaatacctaacaataacagatacaaattctacttcttatttatcacttatc
catggaaaaaccatagtttttactggcgaactatcaagcatgtcaagatctgaagcaaaa
gtaaggtcagaagctgcaggagcaaaagtgtcttcatcattatcaaaaaatacagatttc
ttgattataggtaacaacccagggtcaaaatataaaaaagcacaatccctcaatatacag
atcttaactgaagatttatggctacaatacactgaacagaatgagagttaa
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