Ehrlichia sp. JZT12: K6025_04775
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Entry
K6025_04775 CDS
T10635
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ehj Ehrlichia sp. JZT12
Pathway
ehj03030
DNA replication
ehj03410
Base excision repair
ehj03420
Nucleotide excision repair
ehj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ehj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K6025_04775 (ligA)
03410 Base excision repair
K6025_04775 (ligA)
03420 Nucleotide excision repair
K6025_04775 (ligA)
03430 Mismatch repair
K6025_04775 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ehj03032
]
K6025_04775 (ligA)
03400 DNA repair and recombination proteins [BR:
ehj03400
]
K6025_04775 (ligA)
Enzymes [BR:
ehj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K6025_04775 (ligA)
DNA replication proteins [BR:
ehj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K6025_04775 (ligA)
DNA repair and recombination proteins [BR:
ehj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K6025_04775 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K6025_04775 (ligA)
MMR (mismatch excision repair)
DNA ligase
K6025_04775 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K6025_04775 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
DUF4796_N
Zn_ribbon_ACC
Motif
Other DBs
NCBI-ProteinID:
WDM85128
LinkDB
All DBs
Position
1215924..1217948
Genome browser
AA seq
674 aa
AA seq
DB search
MVNQEEAKLELDKLNEKIKYHDVLYHVHDNPEISDAEYDELCNKRNAIIKTFPQLESIID
YQNNVGSPPDVKFPKVKHEQKMLSLDNAFNQQDIEKFLIRTKKLLDMKDDESICMSCELK
IDGLSFSVIYRKGELFQASTRGNGDFGENITNNIKTLKNLPNTIQNAPDILEVRGEIYID
RSDFIQLNNEGNNFANPRNAAAGSIRQLDPNITAQRKLKYFMYTIINSHCLTQEDSLKKL
KNWGFCVNEYTITTNSIEEAFNFYNQIYDKRSNISYDIDGIIYKVNDIKLQHILGTTSKS
PRWAIAYKFPSIEGKTQLNKISIQIGRTGVLTPIAELSPINIGGVIVTRASLHNKSEIER
KDIREGDYVIVKRAGDVIPQVVDVDKNLRTKESREFTFPTTCPSCGSSLYQEKHEISIYC
TGELFCKDQILEKIKHFISKDAFNIIGFGKKQLLFFYEQGLITNIVDIFRLEEKINNNNL
QLELLPGWGEKSISNLLSAINDSKVISLENFIFALGIRFVGKYIAKILAQHFLSYKKWYD
EMLKLAKDENYTLNIQQIGSKTLNSLKIFFTEQHNLNMMNSLVTYLTITDIKSEHHSSLI
HGKTIVFTGELSSMSRSEAKIKSEAAGAKVSSSLSKNTDFLIIGNNPGSKYKKAQLLKIQ
ILTEDLWLQYIQPT
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggttaatcaagaagaagctaaactagaattagataagctaaatgagaaaataaagtat
catgatgttctgtaccatgtacatgataatccagaaataagtgatgcagaatatgatgag
ttatgtaataaaagaaatgcaataattaaaacctttccacaacttgagtcaattattgat
tatcaaaataacgtagggtcacctccagatgtaaagttccctaaagttaagcacgaacaa
aaaatgctttctttagataacgcttttaaccaacaagatatagaaaaatttttaattaga
accaaaaagctcttagacatgaaagatgatgaatcaatatgcatgtcctgtgaattaaaa
atcgacggtttatcattttctgtcatatataggaaaggtgaactttttcaagcatctaca
agaggtaatggcgattttggtgaaaatataacaaacaatatcaaaactctcaaaaactta
cctaataccatccaaaatgcaccagatattttagaagtaagaggtgaaatatatatagat
cgcagtgattttatacaacttaataacgaaggaaataattttgctaacccacgtaatgct
gcagccggatctataagacaactagatcccaatatcactgctcaacgcaagctaaaatat
tttatgtacacaataataaatagtcactgtctaacacaagaagattcactgaaaaaatta
aaaaattggggattttgtgttaatgagtatactattactacaaatagtatcgaagaggct
tttaatttttataatcagatttacgacaaaagaagtaacataagttatgacattgacggc
attatatacaaagtcaacgatataaaattacaacatatccttggaacaacaagtaaatct
cctagatgggctatagcatataaatttccttctatagaaggcaaaacacaactaaacaaa
atttccatacagatcggaagaactggagtattaactcctattgcagaactttcccccatc
aatattggtggagtgattgttacaagagctagcttacataacaaaagtgaaatagaacgt
aaagatatacgtgaaggtgactacgtcattgtcaaaagagcaggagatgttatacctcaa
gtagttgatgtagacaaaaatttaaggactaaagaatcaagagaatttacttttccaaca
acatgcccatcatgtggaagtagtttatatcaagaaaaacatgagatatcaatatattgc
actggagaattattctgtaaagatcagattctagaaaaaataaagcattttatttcaaaa
gatgcttttaatattattgggtttggaaaaaaacaacttctatttttctatgaacaggga
ttaataacaaatattgtcgatatatttaggttagaagaaaaaataaacaacaataattta
caattagaattgttacctggatggggtgaaaaatcgattagcaatttactctccgcaata
aatgatagcaaagtaattagtttagaaaatttcatatttgctttaggtataagatttgta
ggaaagtacatagcaaaaatattagcgcaacactttctatcgtataaaaaatggtatgat
gaaatgttaaagttagctaaagatgaaaactatacacttaacatacaacaaatagggtca
aaaactctcaactccttaaaaatattctttactgagcaacataatttaaacatgatgaat
agtttagtaacatatctaacaataacagacataaaatctgaacatcattcatcattgatt
catggcaaaactatagtttttactggtgaactatcaagtatgtcaagatctgaagcaaag
ataaaatcagaagctgcaggagcaaaagtttcttcatcactatcaaaaaacacagacttc
ctaattataggaaataatccaggatcaaaatataagaaagcacaactgcttaaaatacaa
attctgacagaggacttatggttacaatacattcaacccacctaa
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