Edwardsiella hoshinae: A9798_11060
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Entry
A9798_11060 CDS
T04508
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eho
Edwardsiella hoshinae
Pathway
eho03030
DNA replication
eho03410
Base excision repair
eho03420
Nucleotide excision repair
eho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A9798_11060 (ligA)
03410 Base excision repair
A9798_11060 (ligA)
03420 Nucleotide excision repair
A9798_11060 (ligA)
03430 Mismatch repair
A9798_11060 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eho03032
]
A9798_11060 (ligA)
03400 DNA repair and recombination proteins [BR:
eho03400
]
A9798_11060 (ligA)
Enzymes [BR:
eho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A9798_11060 (ligA)
DNA replication proteins [BR:
eho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A9798_11060 (ligA)
DNA repair and recombination proteins [BR:
eho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A9798_11060 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A9798_11060 (ligA)
MMR (mismatch excision repair)
DNA ligase
A9798_11060 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A9798_11060 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
HHH_3
Zn_ribbon_NUD
DUF7575
Motif
Other DBs
NCBI-ProteinID:
AOV97431
UniProt:
A0ABM6EKA9
LinkDB
All DBs
Position
complement(2487538..2489565)
Genome browser
AA seq
675 aa
AA seq
DB search
MTSTIEQQLEQLRAALRHHEYQYYVLDDPQVTDAEYDRLMMQLKALESEHPQLVTADSPS
QRVGGAPLEAFGQVHHEVPMLSLDNVFDEASFRAFAKRLHERLKSDATLTFCCELKLDGL
AVSLLYEQGVLVRAATRGDGSTGEDITSNVKTIRAIPLRLQGDDIPARIEVRGEVFMPQA
GFEAMNEEARRRGGKIFANPRNAAAGSLRQLDPRITARRPLTFYCYGSGLLEGGSLPGSH
YQCLQRFKSWGLPVSERVQLCHGSDEVLAYYRQTEQDRPTLGFDIDGVVIKVDDIATQEA
LGFVARAPRWATAFKFPAQEQMTQLNGVEFQVGRTGAITPVARLEPVQVAGVTVSNATLH
NADEIERLGLRIGDTVIVRRAGDVIPQVVGVVEALRPRDAAEIRFPTHCPVCGSEVDRSE
GEAVARCSGGLICAAQRKESLKHFVSRRAMDVEGMGDKVIEQLVEREYVATPADLYRLSA
GKLTGLERMGPKSASKLIDALDRSRSTTLARFLFALGIREVGEATAANLASHFGSLAALR
TADLESLKRVPEVGEVVAQHILHFLSEAHNCQVIDELISAEIGIHWPDVTPTPQAAEIDS
PFAGKTVVLTGSLSVLSRDAAKDRLLALGAKVSGSVSKKTDLVIAGEAAGSKLAKANALG
IPVIDEAQLLRMLGE
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgacttccacgattgaacaacaactcgaacagctgcgtgccgcgttgcgccatcatgag
tatcaatattatgtcctggatgatccgcaggtgactgatgcggaatacgatcgcctgatg
atgcagttgaaggccttagagagcgaacacccgcaactggtgacggcggactcgccgagc
cagcgtgtcggtggcgcgcccttggaggccttcggccaggtacatcatgaggtgccgatg
ctgtcgttggataacgtcttcgatgaagcgagtttccgcgctttcgctaagcgtctgcat
gagcgtctgaaaagtgacgccacgttgaccttctgttgtgaactgaaactggatggcttg
gcggtcagcctgctgtatgagcagggagtgctggtacgagcggcgacgcgcggtgacggc
agcactggtgaagacatcaccagcaatgtgaagaccatccgcgctatcccgctgcgtctc
cagggagacgacattccggctcgcatcgaggtgcgcggcgaggtgtttatgcctcaggcg
ggcttcgaggcgatgaatgaagaggcgcggcggcgtggcggcaaaatcttcgctaacccg
cgtaatgcggcggctggctcgctacgccagctagacccgcgcatcaccgctcgccgccca
ttgactttctattgctacggctccggcctgctagagggtggatcgttaccaggtagccac
tatcaatgtctgcaacgcttcaagtcttggggattaccggttagtgaacgcgtgcaactg
tgtcacggcagcgatgaggtcttggcctactaccgccagacggagcaggatcgcccgacg
ctgggattcgatatcgacggcgtggtgatcaaggtggacgatatcgccacgcaagaggcg
ctggggtttgtggcgcgtgcgccgcgttgggcaacggcgttcaagttcccggcgcaggag
cagatgacacagctaaacggggtcgagtttcaggttggtcgtaccggagcaatcaccccc
gtggcgcgcctggagccggtacaggtcgccggggtaaccgtcagtaatgccactttgcat
aacgcggatgagatcgagcgcctggggctacggattggtgatacggtgatcgtacggcgt
gccggtgacgttatccctcaggttgtgggggtagtggaggcactgcgtccgcgcgatgcc
gccgagatccgttttccgacacattgtccggtatgtggctcagaggtggatcgcagcgag
ggcgaggccgtggcgcgctgtagcggtggcctgatttgtgcggcacagcgcaaagaatcg
ttgaaacacttcgtctcgcgccgagcgatggatgttgaggggatgggggataaggtgatc
gagcaactggtggagcgtgaatatgtcgcgacccctgccgatctctaccgtcttagtgcc
ggcaagctgaccgggctggaacgaatgggaccaaagtcggccagtaagctcatcgatgcg
ttggatcgttcacgcagtaccacgttggcacgcttcttgtttgccttggggatccgtgag
gtgggcgaggctacggcagccaatctggctagccacttcggttcgctggccgcattgcgc
accgccgatctggagagcttaaagcgtgttccggaggtgggcgaggtcgtagcgcagcat
atcctgcactttttgagcgaggcgcataattgccaagtaatcgatgagctgatctccgcg
gagatcggtatccattggccggatgtcacaccgactccccaggcggcggagatcgacagt
ccgtttgccggtaagaccgtggtgttgaccggctcgctgagcgtgttatcacgcgatgcg
gctaaagatcgtctgctggcgctgggggcgaaggtcagtggcagcgtgtcgaaaaagacc
gatctggtgatcgccggggaggctgccggctcgaagctggctaaggctaacgcgttgggc
atcccggtgatcgatgaggcgcagttgctgcgcatgttgggtgaatga
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