Eurypyga helias (sunbittern): 104509345
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Entry
104509345 CDS
T08356
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ehs
Eurypyga helias (sunbittern)
Brite
KEGG Orthology (KO) [BR:
ehs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ehs03036
]
104509345 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
ehs03400
]
104509345 (SMCHD1)
Chromosome and associated proteins [BR:
ehs03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
104509345 (SMCHD1)
DNA repair and recombination proteins [BR:
ehs03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
104509345 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
104509345
NCBI-ProteinID:
XP_010149572
LinkDB
All DBs
Position
Unknown
AA seq
1950 aa
AA seq
DB search
MQQIFLEAMSKHTDNREVSGDRQHSFTKGKSCLANPVAFYGGVTLVDKRRATDVLYLSFS
FALAELIDNSLSATSQNTGIRSIQIKLLFDDAQGKPAVAVIDNGRGMTSKQLNNWAVYRL
SKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDV
HELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSNHITSDDERFLHNLILEERDKESFTAV
IITGVQPDHMQYLKNYFHLWTRQLAHIYHYYIHGPKGNETNAITKDISPFNNIDIQISMF
EKGKVPKIVNLREIKDDMQTLYINTAADSFEFKAHVEGEGIVEGIIRYHPFLYDKETYPD
DPSFPSKLSDDDDDDCIIVEKGARGKRPIFECFWNGRLIPYTTVEDFDWCAPPKKRGLAP
IECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRIFNGQEQRMKIDREFALW
LKDCHEKYDKQIKFTVFKGITTRTDLPSKRMQSPWTMYAAIEWDGKTYKTGQLVKTIKTL
PIFYGSIQKFFLYGDHDGDIFATGGEVQIALEPQTLYAETKTVPISKLDRTVSEKAVKKY
IEDEMARLPDKLSVTWPEGDELLPDETRFAGTPIGALRIEILNKKGEAMQKLPGTSHGGS
KKLLVELKVILHSSTGNKEIISHISQHGGKWPYWFKKMENLHKLGNYTLKLQVVLNESNA
DTYAGRPLPSKIFKFTIIEGKPEKFSVGLLELPFRIGVPFNIPLELQDEFGHATQLTTDI
KPILEASGLTLQYEEITAGTKCIIKGVTAKGCINSCQGKNFNLKVTLPGLKEDTKICKIR
LQPGPPHQLKVKPDSEILKIENGTAFPFQVEVLDESGNVTVQPKLIVHCKFLGASNLPVY
SVECSNAGTNILTGPVIHVQNIKKDQVLKARIEILSCKDVPPVEKTIKLLPSSHVARLQV
LSMDGQKAIQIKHQDEIKWVAGDIMRNLIFQMYDEGEREIHITPAVAEKIKVNWTPKINK
DQLIQGLLPDVKVPTSVKDVRYCLITYLDDHVSLESAFTVRPLPDEPRHIKCKLNGQNTL
QMGEELQGEVDVMITDQYGNQIQTVTSACLSSIGVSGPGLDKSNVKITWQESTLTMRVKG
IRFKPCIPGSKELCFAWREFSDFLRINLTAGSPAKLQFVDWPELEKPVAVINGRELQKPL
IVQLCDQWGNPSPESNVKIILTKSTNLKIVPSNQQHKTDENGRANLGVFSIHAPRGEHTL
QLKALYNKTTLDCPIITLNVLPDPQKPVYVNVKYDRNASFPAGGTFPDFMVSVLSEDDNI
IKNINPARISMKMWEAHSSGTRIPTDVTTFSCSKVKNDKEDGFFYFRDKVIPERVGTYCI
QFNFAMDKTNILSSDQMIVEVVPNDPVRLLPDSLPATPAVSNVRTLTSRTLVKDLYLHIM
DEYNNHTGIDLVGRVIAKIKSPNEDDTEIPQFQGKVNAVEFPFVRGSAEINLVLAENSPG
RDSTEYILVFEPDLPALKKPLEPYHLSFMFYNDFKKQQQMATLTKERDQLSQSIGVYRSW
FDTTNQLVNEIKCQVKEAETRETHLKNELKKHRIEIPQTNTLQYVDSLIKQKMLDQKGVM
KQPRRTCTLPNYPKGNQDILGKIAHLAQIEDNEAAKVISWHLASDMDCVVTLTTEAARSI
FDETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGKVFFKPIGNPMFARDLLTFPDNVEHC
QTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTREGDRIRSNGKFGGLQNKAPPM
DKLRGMVFGAPMPKLYSAFSGQIDLLQQYRAAVLKLDKVNKDLDLHLQSLNTPEMQKKKQ
ELAEQEKNLKLIEQKLGMTPSHKGTESLLQPVVLDMSDSPIPPKRMRRETVKKMYSSEDW
MSSPTKKQQQQQSLQISTSELNGTPRKRKA
NT seq
5853 nt
NT seq
+upstream
nt +downstream
nt
atgcaacagatcttcctggaagctatgtcaaagcatacggataacagggaggtgtctgga
gacagacaacatagcttcaccaagggcaaatcatgcctggctaatccagtagccttctat
ggtggagtgactttggtggataagagaagagcaactgatgtcctttatcttagcttctca
tttgcccttgctgagttgattgacaattctctgtcagctacatcccaaaatactggtatt
cggagcatacagataaaattgttatttgatgatgcccaaggaaaaccagctgttgctgtg
atcgataatggaagaggaatgacttctaaacagcttaacaactgggctgtgtatagattg
tcaaagtttacaagacaaggtgacttcgagagtgatcattcaggatatgtacgtccttta
ccagtgcctcgtagtttaaacagtgatatttcctattttggagttggaggcaaacaagca
gtgttcttcgttggacagtctgccagaatgataagcaaacctgcagattctcaggatgtt
catgagcttgtcctttctaaagaggattttgaaaaaaaggagaaaaacaaagaagcaata
tatagcggatacattagaaacagaaagccatctgactctaatcacatcacaagtgatgat
gaaagatttcttcataacctaatattagaagaaagggataaagagagtttcacagcagtt
atcattacaggtgtacaaccagatcatatgcagtacttgaaaaactactttcatctttgg
acaaggcagctggcacatatctatcactattatatccatggaccaaaaggaaatgaaact
aatgcgataacaaaagacataagcccttttaacaacattgacattcagatttcaatgttc
gaaaaaggaaaagtaccaaagattgtcaatcttagggagatcaaagatgacatgcagaca
ttgtatataaatactgcagcagatagttttgagtttaaggcacatgttgaaggagaaggt
atagtggaaggcatcatccgataccatcccttcctctatgataaagaaacataccctgat
gatccaagttttccatcaaaattaagcgatgatgatgatgacgactgcattatagtagaa
aagggtgccagaggtaaaaggcctatttttgaatgtttttggaatggaagattaatacca
tacacgactgtggaagattttgactggtgcgctcctccaaagaagagaggattggcacca
attgaatgctacaacaggatatctggtgcgttatttaccaatgacaagttccaggtcagc
acgaacaaactcactttcatggatctggagctgaagctgaaagataagaacactctgttc
acaagaatcttcaatggacaggagcagcgaatgaaaattgacagagaatttgctttgtgg
ctcaaagactgtcatgaaaaatatgacaaacagataaaattcactgtctttaaaggaata
actacacgtactgatttaccatccaaaagaatgcagagtccttggacaatgtatgctgca
atagagtgggatgggaaaacatacaaaactggacagctggtgaaaactattaagactctt
ccaatattctatggaagtattcagaaattttttttgtatggagatcatgatggagatata
tttgccactggaggagaggttcagattgctttggaacctcagacgttgtatgctgaaacg
aaaactgttccaatctcaaaacttgacagaacagtgtctgaaaaggctgttaaaaaatac
atagaggatgaaatggcaaggcttcctgacaaattatcagtaacatggcctgaaggagac
gaattattaccagatgaaacaagatttgctggtacaccaataggagcattaagaatagaa
attttgaataaaaaaggagaagcaatgcaaaaacttccgggtacaagccacggaggttca
aagaaactacttgttgagctcaaggttattttacattcatctacagggaataaagaaata
atttcccatatcagtcagcatggaggcaaatggccatactggtttaaaaaaatggaaaat
cttcataaacttgggaactacaccttgaaactgcaagtagtattgaatgaaagtaatgca
gacacctatgcaggaaggcccctaccatctaaaatatttaaatttactattatagagggc
aaaccagagaaattttcagtgggtcttttggagcttccttttcgaattggagtgcctttt
aatattcctttggaattacaggatgaatttggtcatgcaacacagttgacaactgacatt
aaaccaattcttgaagctagtggactgacgttgcagtacgaagaaataactgcaggaaca
aagtgcatcattaagggtgtcactgctaaaggctgtataaatagttgccagggcaagaac
tttaatctgaaagttactcttcctggtttgaaagaagacacaaaaatctgtaaaataaga
ttgcagcctggtcctcctcatcaattgaaagtaaaaccagattctgaaattctgaaaatt
gaaaatggtacagctttcccctttcaggttgaagtactggacgaatcaggaaatgtaaca
gtacagccaaagttgatagttcattgtaagtttttaggtgcttcaaaccttcctgtgtat
tctgtggagtgcagtaatgcaggaacaaatattttaactggtccagttatacacgtgcag
aatataaagaaagaccaggtgctgaaagcaaggattgaaatacttagttgtaaagatgtg
ccaccagtggaaaagactattaaacttcttcctagcagtcatgttgcaagactacaggtc
ttaagtatggacggacaaaaagctattcaaattaaacatcaggatgaaattaagtgggtt
gctggcgatatcatgcgcaaccttatatttcagatgtatgatgaaggggaaagagagata
cacataactccagctgtggcagaaaaaatcaaggttaactggacacctaaaattaacaaa
gaccagttgattcagggattattacctgatgtaaaagtaccaacatcagtaaaagatgta
cgttactgtctgattacttatcttgatgaccatgtgtctttggagagcgcgttcacagtc
agaccgcttccggatgaacccaggcacattaagtgtaaattaaacggacaaaacacactg
cagatgggtgaagaactacaaggtgaagttgacgtaatgattacagatcagtatggaaat
cagattcagacagtgacatctgcgtgtctaagttccataggagtttctgggcctggactt
gataaatcaaatgtgaaaataacttggcaggaaagtactctaacaatgagagtaaaaggt
attcggtttaagccttgtatacctggaagcaaagaattgtgcttcgcttggcgtgaattt
tctgactttctcagaataaatttaactgcaggatcccctgctaaattacagtttgttgac
tggcctgagttagaaaagcctgttgcagtgatcaatggtagagaattgcagaagcctcta
attgttcagctgtgtgatcagtggggaaatccttctcctgaatcaaatgtcaaaatcatc
cttacaaagagtaccaacttaaagattgttccttcaaaccagcaacataaaacagatgaa
aatggtagggctaacctgggagtttttagtattcatgcacctaggggagagcacacttta
cagcttaaagccttatacaacaagaccacattagactgtcctataatcacattaaatgtc
ctgcctgatcctcagaaacctgtctacgtcaatgttaaatatgacagaaatgcttcgttt
ccagcaggaggtactttccctgattttatggttagtgttctttctgaagatgacaacatt
attaaaaatatcaatccagcacggatttctatgaaaatgtgggaagcacacagcagtgga
actaggataccaactgatgttacaacattcagttgtagtaaagtgaagaatgataaggaa
gatggcttcttttacttcagggataaagtgatcccagagagagtgggcacttactgtatc
cagtttaactttgcaatggataagacaaatattctcagcagtgaccagatgatagttgaa
gttgtacctaatgaccctgtacgtttgttacctgattctttaccagctactccagcagtt
tccaatgttcgaactcttactagccgtacactggtcaaggatttatacctccacataatg
gatgagtacaacaatcacactggaattgatctagttggcagagtaatagcaaaaattaag
agccccaatgaagatgatacagagatcccacagtttcaggggaaagtcaatgcagttgag
tttccatttgtcagaggatcagctgaaattaatctagtgctggctgaaaacagtcctgga
agagacagcactgaatacattcttgtctttgagccagatctaccagctttgaaaaagcct
ctagaaccataccatctgtcatttatgttttacaatgacttcaagaagcagcaacagatg
gcaacacttacaaaggagagagaccagttatctcagtccataggtgtttacagaagttgg
tttgatactactaatcagcttgtaaacgaaatcaaatgtcaggttaaggaagctgaaaca
agagaaactcatctgaagaatgaactgaagaaacaccgaattgaaataccacagacaaac
acacttcaatatgtggattctcttataaaacaaaagatgttggatcaaaaaggagtaatg
aaacagccaagacgaacttgtacgctcccaaactatccaaaaggcaaccaggacatttta
ggcaagattgcgcatttagcacaaattgaggataacgaagcagcgaaagttatctcttgg
catttggcaagtgacatggactgcgtggtcacactgactactgaagccgctcgttccatt
ttcgatgaaactcaaggtcgacagcaagtgctaccccttgattctatttacaagaagaca
ctccctgattggaacaggcctttacctcacttaagaaatggaaaagtcttcttcaaacct
attggaaatcccatgtttgccagagatctgttaacatttccagataatgtagagcattgt
caaacagtgtttgggatgctcttgggcgacactatcatcatagacaacttggatgctgcc
aaccattacagaaaagaggttgtaaaaattacacattgccctactttgctgactagggaa
ggagacaggattcgcagcaatggaaaatttggtggccttcagaataaagcccctccaatg
gacaaactcagaggaatggtgtttggagcacccatgccaaaactttactctgctttctct
ggacagatagatcttcttcagcagtaccgtgcagcagtgttgaaactcgataaagtgaat
aaggaccttgatttacatttgcagtcacttaacactccagaaatgcaaaagaaaaagcag
gaacttgccgaacaagagaaaaatctcaagctaatagaacaaaaactgggtatgactcca
tcacataaaggcacagaatcattacttcagcctgtagtgttagatatgtctgactcccct
atccctcccaaaagaatgcgaagagaaacagtaaaaaaaatgtacagctcagaagactgg
atgtcctcccccacaaagaagcagcagcaacagcagtcactgcaaatatccacttcagaa
cttaatggaactccacgaaagagaaaggcatag
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