Enterobacter huaxiensis: D5067_0006710
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Entry
D5067_0006710 CDS
T08129
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ehu
Enterobacter huaxiensis
Pathway
ehu03030
DNA replication
ehu03410
Base excision repair
ehu03420
Nucleotide excision repair
ehu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ehu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D5067_0006710 (ligA)
03410 Base excision repair
D5067_0006710 (ligA)
03420 Nucleotide excision repair
D5067_0006710 (ligA)
03430 Mismatch repair
D5067_0006710 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ehu03032
]
D5067_0006710 (ligA)
03400 DNA repair and recombination proteins [BR:
ehu03400
]
D5067_0006710 (ligA)
Enzymes [BR:
ehu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D5067_0006710 (ligA)
DNA replication proteins [BR:
ehu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D5067_0006710 (ligA)
DNA repair and recombination proteins [BR:
ehu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D5067_0006710 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D5067_0006710 (ligA)
MMR (mismatch excision repair)
DNA ligase
D5067_0006710 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D5067_0006710 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Prok-E2_C
DUF2229
Motif
Other DBs
NCBI-ProteinID:
UNC49272
LinkDB
All DBs
Position
1375246..1377261
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELVTPDSPTQ
RVGAEPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDSLSWCCELKLDGLA
VSILYENGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLRGENIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHL
GRLLQFKEWGLPVSNRVRLCDSPEDVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQKTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVESERPEETRAIEFPTHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALEK
ASIEDLQKVPDVGIVVATHVFNFFAEESNREVIGKLLEEGIKWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVASSVSKKTDLVIAGEAAGSKLAKAQELGIDVI
DEAEMLRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaactcactgaactgcgaaccacgcttcgccatcatgaatat
ctctatcatgttatggacgccccggaagtaccggatgcggagtatgaccgcctgatgcgc
gagctgcgcgaattagaggcgcagcacccggagttggtaacgcctgattctccaacccag
cgcgtcggtgcagagcctttgggggccttcagccaggtgcgccacgaagtgccgatgctg
tcgctggataacgtttttgatgaagagagtttcctcgcgttcaacaagcgcgtgcaggat
cgtctgaagagcagcgatagccttagctggtgctgcgagctgaagctggacggtctggcg
gtgagcatcctttatgaaaacggcgtgctggtgcgtgccgccacgcgcggtgatggcacc
acgggtgaagacattaccaccaacgtgcggaccatccgcgctatcccgctcaaattgcgc
ggtgagaacattccagcgcgtctggaagtgcgtggtgaagtgttcctgccgcaggcgggc
tttgaaaaaattaatgaagaagcgcgacgcaccggcgggaaagtgtttgctaacccgcgt
aacgcggcggcaggttcattgcgccagctcgacccgcgcattaccgcgaagcgaccgctt
actttcttctgctacggcgttggtattctggagggcggcgagctgcctgatacgcacctt
gggcgcctgctgcagtttaaagagtgggggttaccggtaagcaaccgcgtgcggctttgc
gattccccggaggatgtgctggcgttctaccacaaggttgaagaagaccggcctacactc
ggcttcgatatcgacggcgtggtgatcaaggtcaactcccttgccttacaggaacagctc
ggctttgtggcgcgcgcgccgcgctgggcggtggcctttaagttcccggcgcaggagcag
aagacctttgttcgcgacgtggagttccaggttggccgtaccggggccattaccccggtt
gcccgcctggagccggttcaggtcgccggggtgctggtgagcaacgccacgctgcacaat
gccgatgaaattgaacgcctaggcctgcgcattggtgacaaagtggtgattcgccgcgcg
ggagacgtgatccctcaggtggtgaacgtcgttgagtcagagcggcccgaagagacgcgc
gctattgaattcccgacgcactgcccggtttgcggttcagacgttgagcgcgtagaaggc
gaggcagtgacgcgctgtacgggcgggttaatctgcggcgcgcagcgtaaagaagcgctg
aagcactttgtatcccgtcgcgcgatggacgtcgacggcatgggcgacaagattatcgac
cagctggttgagaaagagtatgtccatacgcctgcggatctgttcaggctgacggcgggc
aagctgaccgggcttgaccgtatggggccgaaatcggcgcagaacgtggttaacgccctg
gaagcggcgaaagaaactacctttgcccgcttcctctatgcgctggggatccgtgaagta
ggtgaagccacggccgccgggctggcggcgtactttggcacgctggacgcgctggagaaa
gccagcattgaagacctgcagaaagtgcctgacgtcggcatcgtggttgccacgcacgtt
tttaacttttttgcggaagagagcaaccgtgaggtgatcggtaagctgctggaagagggc
atcaaatggcccgcgccggtggtggtcaacgccgaagagattgacagcccgtttgccggg
aaaacggtggtgctgaccggtagcctgagccagctttcccgcgatgacgcgaaggcgcgc
ctggtggcattaggggcaaaagtagcgagcagcgtgtcgaagaaaaccgatctggtgatc
gccggggaagccgccggttcgaagctggcaaaagcccaggagctgggtatcgacgttatc
gacgaagcggaaatgctgcgcctgttaggagagtaa
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integrated database retrieval system
