Emiliania huxleyi: EMIHUDRAFT_106144
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Entry
EMIHUDRAFT_106144 CDS
T02915
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ehx
Emiliania huxleyi
Pathway
ehx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ehx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EMIHUDRAFT_106144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ehx03400
]
EMIHUDRAFT_106144
Enzymes [BR:
ehx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EMIHUDRAFT_106144
DNA repair and recombination proteins [BR:
ehx03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
EMIHUDRAFT_106144
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
Motif
Other DBs
NCBI-GeneID:
17254356
NCBI-ProteinID:
XP_005760530
JGI:
Emihu1_106144
UniProt:
A0A0D3IA16
R1DB34
LinkDB
All DBs
Position
Unknown
AA seq
874 aa
AA seq
DB search
MLDKENRSANPAAQDVGFFEVARLLDRLEGISGAQARTRCVSRWFDASAERRASTLPLFR
VLLVAETDRAFYVKEERLAALTATALGIATDSACGRRLQGWLDPARSGGGDAMHATAGNL
SAVVESVVALRAPARAGGVAGRPLAIREVDAAMDVLAAGAPEFHAGRGARSGPHAAVLHG
LLSRCSPVEAKWLTRLLLRDLQIRSPCADVRVEWPRSLMDGFLPHQGPGRPGFYSYWLRR
GDLGEACGRAELARAMLDAQSLGGACGPSCVAAEWPLLRGLSHGSYVHVALSHPVTSLSR
MRKELLGDGGAGELVVQTKYDGERIQLHVWQDPAAPGGRAVRIFSRGGRDSTGRRALAVD
ALRLSLGADAAPPAGASQHLLAAWRGAEAAGRKPAVRSAILDGEILVFNERVRRVEAFGT
VQHLRPGGKAGCDGSRHLCVVWRGRTRDGAASRTAALTAPPPPPLRFDALELNGDDLVSR
RAPLVERLERLSAAVTPLDGFVHVAPSELVRAADVPRLGELWAAAREAREEGLVLKAALS
PYTPNQRGCWGKLKHDRVDGLGDTITAALVAARWGANDRSGRLGAYGFGAVLNPTEVRVS
GAAPRFVFLFWSECGLDSLETKLLGAGGAALLGEPGISPPRMAPLPRGSAPEWLSGLPRG
EADRPHFVLRSPADAIPTELLGSDFVPSRGPPANFRLELRFPRIRCVRPSDPLSSVLSAA
EYDAAGRAARAPPSEAQVREAVERVCAPPPPTKRRCRIDGSLFSKRQAAAREPAPAELAP
VAQSSQESTTQESTTQESTSQESSASCGLRARAAPHLPPAATASPPGDDLAAVFRAEEVK
IKAWHRQLRREAFPPPPKALRRALRARDRLRRQT
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgctggacaaggagaaccgctccgccaacccggcggctcaagacgtcggcttctttgag
gtggcgcgcctgctggaccgcctcgaaggcatctccggcgcgcaggcacgcacgcgctgc
gtaagccgctggttcgacgcctccgccgagcggcgggccagcaccttgccactcttccgc
gtgctgctcgtcgccgagacggaccgcgctttctacgtcaaggaggagcggctcgccgcg
ctgacggcgaccgcgttgggcatcgcgaccgacagcgcgtgcgggaggcggctccagggc
tggctcgacccggcccgctccggcggcggggacgcgatgcacgcgacggccggcaacttg
tccgcagtggtcgagtccgtcgtggcgcttcgtgcgccggcgcgggctggcggcgtggcc
ggcaggccgctcgcgatccgagaggtcgacgcggcgatggatgtcctcgccgccggcgcg
cccgagttccacgccgggcgcggagctaggagcggtccgcacgcggccgtgctgcacggg
ctgctctcgcgctgctcgccggtcgaggcaaagtggctcacgcggctgctgctgcgcgac
ctgcagatccgctcgccctgcgccgacgtgcgggtcgagtggcctcgcagcctgatggac
ggcttcctgccgcaccaaggacccggccgacctggcttctactcctactggctgcggcgc
ggcgacttgggcgaggcgtgcgggcgtgcggagctggcccgtgcgatgctggacgcgcag
tccctcggtggcgcctgcgggccgagctgcgtcgcggcagagtggccgctcctgcgaggg
ctgtcccacggctcgtacgtgcacgtcgccctcagccacccggtcacgagcctctcgcgc
atgcggaaggagcttctcggagacggaggggcgggcgagctggtcgtgcagacaaagtac
gacggcgagcgcatccagctccacgtctggcaggacccggcggcgccgggaggacgcgcc
gtccgcatcttcagccgcggcgggcgcgactcgaccggccggagggcgctcgccgtcgac
gcgctgcgcctctccctcggcgccgatgccgctccgccggcgggcgctagccagcacctg
ctcgcggcgtggcggggcgcagaggcggcgggccgcaagccggcggtccgctcggcgatc
ctcgacggcgagatcctcgtcttcaacgagagggtgcggcgggtggaggcgttcgggacg
gtgcagcacctccggccgggcgggaaggcgggctgcgacggctcgcgccacctctgcgtc
gtctggcgcgggcgaactcgcgacggagccgcctcgaggacagccgctctgaccgcgccg
cccccgccgccgcttaggttcgacgcgctcgagctaaacggcgacgacctcgtcagccgc
cgcgcgccgctcgtggagcgcctcgagcgcctctccgctgccgtcacgccgctggacggc
tttgtgcacgtggcgccgtcagagctggtgcgtgctgccgacgtgccgcgcctgggagag
ctctgggcggcggcacgggaggcgcgcgaggaggggctcgtgctcaaggcggcgctctca
ccctacactcccaatcagcgcggctgctgggggaagctcaagcacgaccgagtagacggg
ctcggcgacaccatcacagcggcgctggtggcggcgcggtggggcgccaacgaccgctcg
ggccggctcggcgcctacggcttcggcgcggtgctcaacccgaccgaggtgcgggtatcg
ggcgccgctccgcgcttcgtctttctcttttggtcggagtgcggcctcgacagcctcgag
acgaagctgctcggcgccgggggagcggcgcttctcggcgagccgggcatctctccgccg
cgcatggccccgctgccccgcggctcggcgccagagtggctgagcggtttgccgcgcggc
gaggccgaccgaccgcacttcgtgctccgctcgcccgccgacgccatccccaccgagctc
ctcggctctgactttgtcccctcgcggggcccgcccgccaactttcgactcgagctccgc
ttcccgcgcatccgctgcgtccgcccctccgatcccctctcctcggtcctctcggccgcc
gaatacgacgcggctggccgcgcggcgagggcgccgccctccgaggcgcaggtgcgggag
gcagtcgagcgagtgtgcgcgccgccgccccccaccaagcgccgctgccgtatcgacggc
tcgctcttctcgaagcggcaagccgccgcgagagagcctgctccggcggagcttgcgccg
gtggcgcagagctctcaggagtcgacgacgcaggagtcgacgacgcaagagtcaacctcg
caggagagctccgcttcgtgcggtctgagggcgcgagccgcgccgcacttgccaccggca
gcgactgcaagcccgccgggcgacgaccttgccgcagtcttccgcgcagaggaggtgaaa
atcaaggcctggcatcgacagttgcggcgcgaggcgttcccacctcctccaaaggccttg
cgccgggcccttcgtgctcgcgaccgtctgcgccgccagacatag
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