Emiliania huxleyi: EMIHUDRAFT_458837
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Entry
EMIHUDRAFT_458837 CDS
T02915
Name
(RefSeq) putative DNA ligase
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ehx
Emiliania huxleyi
Pathway
ehx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ehx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EMIHUDRAFT_458837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ehx03400
]
EMIHUDRAFT_458837
Enzymes [BR:
ehx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EMIHUDRAFT_458837
DNA repair and recombination proteins [BR:
ehx03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
EMIHUDRAFT_458837
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
BRCT
PTCB-BRCT
LacI
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
17264577
NCBI-ProteinID:
XP_005771468
JGI:
Emihu1_458837
UniProt:
A0A0D3J6A4
R1EDV0
LinkDB
All DBs
Position
Unknown
AA seq
735 aa
AA seq
DB search
MEAMCTECEDRDARLDVIDIQLFHALNPKSCNRTTWEQVPKIMGKQGDFVAEGKLDGERD
ASHLYGESMEDVLCECVREDVTSLLLDGEMMVVDLETGRYLPFGENRSLKDFGTSMRHCF
VAFDLLLYNGRSMTGATLAERSELLRKAVRTKQHALTLIERFEVGERGAGATTAVMRQLD
VMMSRGLEGVVFKSLSSKYDPGSRDKSWIKLKPDFVDGMGDTLDLLILGGYYGEGRRRSG
AVSTFLMGVRAPPEAAKRVGGAAHPLFYPFCKVGTGYSLPQLRELRERLMPASLTRRRGN
ALGHGASLTAVSCEQVSHEWKNSRRPAHLCHWEPSKRDDIPDYWFEPEASVVLELTAFEI
ITPRESFLPANYTLRFPRVKRVRYDKGWEGAETFERVVELFKECDGRLSANKRRAEEIAA
SRASAGPAAKKRAAGVAPTVGVPWHLKLSADLANTAVECYALDGVVAVVKGTLSRRPGVE
TQIKRLGGKVHKNMTSLTTHLVDAPGAEVLAEVERARRGGGSFEVVTAAWVDECSRVHAR
VTLEPRYVRHVSEATREQIEAIMDEWGDNYTIAADPESLVDSMRLVREQRSAGGNCGDSP
LAREAHVADALRDLDDETAVALRTRYAMLRGVVAYVPRGSVALRLRLRLLGAQTVDEPSA
DSTHAVLSASTSADERQRLRDKFTEDRVRDGRPSCGRHIVSDRWLAECERRGQREPEAQE
DAWFGDRVGIRDRAL
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggaggccatgtgcaccgagtgcgaggatcgcgacgcgcggctcgacgtgatcgatatt
cagctcttccacgcgctcaacccgaagagttgcaatcggacgacctgggagcaggtgccg
aagatcatgggcaagcagggcgactttgtggcggaggggaagctcgacggggagagagac
gcgagccacttgtacggcgagtcgatggaggacgtcctctgcgagtgcgtgcgagaggac
gtcacctcgctcctgctcgacggcgagatgatggtggtggacctcgagacgggccgctac
ctgccctttggcgagaaccgctcgctcaaggacttcggcacgagcatgcgacactgcttc
gtcgccttcgatctgctgctctacaacggcaggagcatgacgggcgcgacgctggcggag
aggagcgagctcctgaggaaggcggtgcggaccaagcagcacgctctcacgctcatcgag
cggttcgaggtgggcgagcgcggcgcgggcgcgaccacagcggtgatgcgtcagctcgac
gtgatgatgagccgcggcctcgagggcgtcgtcttcaagtcgctgtcctcaaagtacgac
cccggctcgcgggacaagtcgtggatcaagctcaagcccgacttcgtcgatgggatgggc
gacacgctcgacctgctcatccttggcggctactacggcgagggccgtcgccggtcgggc
gccgtgtccacctttctgatgggcgtccgcgcgccgcccgaggcggccaagcgcgtgggt
ggcgcggcgcacccgctgttttatccgttctgcaaggtcggcacgggctactcgctgccg
cagctcagggagctacgtgagcggctgatgccggccagcctgacacgaagacgagggaat
gcgttgggccacggcgcctcgttgaccgcggtctcctgcgagcaggtttcgcacgagtgg
aagaacagccggcggcctgcgcacctgtgccactgggagcccagcaagcgggacgacatc
cccgactattggttcgagcccgaggcgtcggttgtgctcgagctgactgccttcgagatc
atcacgccgagagagtccttcctgcccgcaaactacacgctccgcttccctcgcgtcaag
cgcgtgcggtacgacaagggctgggagggcgccgagaccttcgagcgggttgtcgagctc
ttcaaggagtgtgacgggcggctttcggcaaacaagcggcgggcggaggagatcgcggcc
agccgcgcgagcgccgggcccgccgcaaagaagcgcgccgcaggcgtcgcgccgacggtt
ggcgtgccctggcacctcaagctgtcggcggacctcgcgaatacggcggtcgagtgttac
gcgctagacggcgttgtggcggtggtcaagggcacgctctcccggcggcccggcgtcgag
acgcagatcaagcgacttggcggcaaagtgcacaagaacatgaccagcctcaccactcac
ctcgtcgacgctccgggcgccgaggtgctcgccgaggtggaacgggcaaggcgcggcgga
ggcagcttcgaggtggtcacggctgcgtgggtggacgagtgctcgcgggtgcacgcccgc
gttaccctcgagccacggtacgtccggcacgtgagcgaggccacccgcgagcagatcgag
gcaatcatggacgagtggggcgacaactacaccatcgccgccgaccccgagtcgctcgtc
gactccatgcgtctcgtgcgcgagcagcgctccgccggcggcaattgcggcgacagcccg
ctggccagggaggcgcacgtggcggacgccttgcgggacctcgacgacgagactgcggtg
gcgctgcgaacacgctacgcgatgctgcgcggcgtggtcgcctacgtgcctcgtggcagc
gtcgcgttgcggctgcggctgcggctgctcggcgcgcaaaccgtggacgagccttcggcg
gattcgacacacgcagtgctgtcggcttcgacgagcgccgacgagcggcagcgcttgcgg
gacaagtttacggaggatcgggtgcgcgacgggcgccccagctgtggcaggcacatcgtg
tcggaccgctggctcgccgagtgcgagaggcggggccaacgcgagcccgaggcgcaggag
gacgcgtggttcggtgatcgggtgggaattagggaccgtgcgttgtag
DBGET
integrated database retrieval system
