Edwardsiella ictaluri: NT01EI_1249
Help
Entry
NT01EI_1249 CDS
T00912
Name
(GenBank) DNA ligase, NAD-dependent, putative
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eic
Edwardsiella ictaluri
Pathway
eic03030
DNA replication
eic03410
Base excision repair
eic03420
Nucleotide excision repair
eic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NT01EI_1249
03410 Base excision repair
NT01EI_1249
03420 Nucleotide excision repair
NT01EI_1249
03430 Mismatch repair
NT01EI_1249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eic03032
]
NT01EI_1249
03400 DNA repair and recombination proteins [BR:
eic03400
]
NT01EI_1249
Enzymes [BR:
eic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NT01EI_1249
DNA replication proteins [BR:
eic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NT01EI_1249
DNA repair and recombination proteins [BR:
eic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NT01EI_1249
NER (nucleotide excision repair)
GGR (global genome repair) factors
NT01EI_1249
MMR (mismatch excision repair)
DNA ligase
NT01EI_1249
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NT01EI_1249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ACR68457
UniProt:
C5B7F1
LinkDB
All DBs
Position
1240086..1242113
Genome browser
AA seq
675 aa
AA seq
DB search
MTPMIEQQLEQLRDALRHHEYQYYVLDDPQITDAEYDRLMMQLKQLEAVHPALVTVDSPS
QRVGGAPLAAFGQVHHEVPMLSLDNVFDEESYQAFDKRLHERLKSDEPLTFCCEPKLDGL
AVSLLYEQGVLVRAATRGDGTTGEDITSNVKTIRAIPLRLQGEAIPARIEVRGEVFMPQD
GFEAMNEEARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGTGQLEGGALPDSH
YQCLQRFKSWGLPVSERVRLCCGSAEVLAYYRQIGQARPTLGFDIDGVVIKVDDIAIQER
LGFVARAPRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVLVAGVTVSNATLH
NADEIERLDLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDAHEIGFPTHCPVCGSEVERTE
GEAVARCSGGLICAAQRKESLKHFVSRRAMDVEGMGDKVIEQLVDKEYVATPADLYRLSA
GKLTGLERMGPKSATKLIAALDRSRETTLARFLFALGIREVGEATAANLASHFGSLQALR
AADLESLKRVPEVGEVVASHIVHFLSEEHNRQVIDELISDEVGIRWPEGAPAQSAPAVDS
PFAGKTVVLTGSLSVLSRDEAKDRLTALGARVSGSVSKKTDLVIAGDAAGSKLAKANILG
IEVIDEAQMLRMLGA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgactcccatgattgaacaacaactcgaacagctgcgtgatgcgctgcgccatcatgag
tatcaatactacgttttggacgatccgcagattaccgatgcagagtacgatcgcctgatg
atgcagcttaagcagctggaggccgtgcacccggcgctggtgacggtggattccccgagc
cagcgcgtcggtggcgcaccgctggcagcctttggccaggtgcaccatgaggtgccgatg
ctctcgttggataacgtatttgatgaggaaagttatcaggcgtttgataagcgcctgcat
gagcggctgaaaagtgacgaaccgctgaccttctgctgtgagccaaagctggacggattg
gcggtaagcctgctgtatgagcagggggtactggtacgcgcggcgacgcgcggtgatggg
acaaccggcgaagatattaccagtaatgtgaaaaccattcgcgccatcccactgcgtttg
cagggagaggctatccctgcacgcattgaggttcgtggcgaggtcttcatgccgcaggat
ggctttgaggcgatgaatgaggaggcgcgccggcgcggcgcgaaaatttttgccaatccg
cgcaacgccgctgccggatcgctgcgacagcttgacccgcgcatcaccgcgcagcgcccg
ctgaccttctactgctacggcacaggccagctggaggggggcgcgctgccggacagtcac
tatcagtgcctgcagcgctttaagtcctggggactgccggtcagcgaacgggtgaggctg
tgctgcggtagcgcagaggtgctggcctactatcgccagatcgggcaggcgcgaccgacg
ttaggctttgatatcgacggcgtggtgatcaaggtggacgatatcgccatccaggagcgg
ctgggctttgtcgcccgcgcgccgcgctgggcgacggcgttcaagtttccggcacaggag
cagatgacgcggctgaacggggttgagtttcaggtcggtcgcaccggggccatcacgccg
gtcgcgcgcctggagccggtgctggtggccggggtgaccgtcagcaacgcgacgctgcac
aatgcggatgaaattgagcgtctggatctgcggatcggcgatacggtgatcgtccgccgc
gccggtgacgtgatcccgcaggtggttggggtggtggaggcgatgcgtccgcgcgatgcc
cacgagatcggctttccgacccactgtccggtatgtggctctgaggtggagcggacggag
ggcgaggcggtggcacgctgcagcggtggcctgatctgtgccgcgcagcgcaaggagtcg
ctgaagcattttgtatcgcgccgcgcgatggatgtcgaggggatgggcgataaggtcatt
gaacagctggtggataaagagtatgtcgctacgcccgccgatctgtaccgcctgagcgcc
ggtaagctgaccggcctggagcggatggggcccaagtcggccaccaagcttattgctgcc
ctcgatcgctcgcgggaaaccacgctggcccgttttctctttgcgctgggcatccgcgag
gtgggggaggcgacggcggccaatctggccagccactttggttcactgcaggcgctgcgc
gcggcggatctggagagcctcaagcgcgttcccgaggtgggtgaggtggttgccagccat
atcgtccactttttgagcgaggaacataaccgccaggtgatcgatgagctgatctccgac
gaagttggcatccgctggccggagggggcaccggcgcagtctgcgcccgcagtcgacagc
ccgtttgccggaaagaccgtggtattgaccggctcactgagcgtactgtcgcgcgatgag
gcgaaggatcgtttgacagcattgggcgcccgggtcagcggcagcgtatcgaagaagacc
gatctggtgatcgccggcgatgcggcgggctccaagttggcgaaggccaatattctgggc
atcgaggtgatcgatgaggcgcagatgctgcgcatgctgggggcataa
DBGET
integrated database retrieval system
