Embiotoca jacksoni (black perch): 138208433
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Entry
138208433 CDS
T10523
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
eja Embiotoca jacksoni (black perch)
Pathway
eja03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
eja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
138208433 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eja03400
]
138208433 (lig4)
Enzymes [BR:
eja01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
138208433 (lig4)
DNA repair and recombination proteins [BR:
eja03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
138208433 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
C8-3_MUC4
Motif
Other DBs
NCBI-GeneID:
138208433
NCBI-ProteinID:
XP_069022381
LinkDB
All DBs
Position
Unknown
AA seq
903 aa
AA seq
DB search
MESKSAAAAPPSVAAQVPFLDLCNTLEKIQKSKLRPDKSKILGDFIESWRKFHSALHKDE
PKTTDSFYPAMRLTVPSFERERMAYGIKENMLAKLYIDVLGLPKNGPEAHKLLNYRAPTT
SQGEAGDFAGMAYFVLKKRCSGQGNLSIKEVNDFLDSVAINNASKKKDLVKKSLLHLITQ
SSALEQKWLIRMILKDMKLGVSKETVLQVFHADAADLYNVNTDLNKVCQQLHDPSVSLSE
VSIGLFSAFKPMLAGVANIRNVEKQMGNSPFFIETKLDGERIQLHKDGDVYKYFSRNAFD
YTQQFGGSPLEGSLTPYVHNVFKSHVVNCILDGEMMAYNPTADTFMQKGSKFDIKRLTDD
SELQTCFCVFDVLMVNDRKLGKETLRKRHETLQTVFAPVKGRIQVVPKTDARTVREVVDA
LNDAIDSREEGIMVKDPLSVYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGRRG
GMMSHFLCAVAEAPKPGEKPSVFHTFCRIGSGYTMKELYDLGLKLAEHWKVYRKNDPPAS
LLCGTEKPEVYIEPRNSVILQVKATEIVGSDMYKTNCTLRFPRIEKIREDKEWHQCTTLA
ELDQFRSKASGKLASRHLCIDADEPQKKKRKLPAKNKKAFGVVDHFKPQDLSGVTKETDM
FEDVEFCILNGTEDHPKSELEKGVARCGGIVVQNPGKDSYCVIAGVENMRVKNLIAANQH
DVVRAAWLLECLDLKEVVPWQPRHMIHMSPSTREHFAKEYDGYGDSYFVDTDERQLREVF
GRIGAASGVDAGQVEERCGWDDLPTSMFRPFTAYMDADVGDPESAAAASCLEIRAQEFLY
HGGTVAQKLEEGVSHVVVAEETRLRDLRTVRRRFRKKFKIVRDSWVTDSIEAGYVTNDTD
YSV
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggagtccaagagcgccgctgcagcgccgccgtctgtcgccgctcaggttcctttcctt
gacttgtgcaacacgttagagaaaatccagaagtctaaactccggccggataagtcgaag
atcctcggggatttcatcgagtcgtggcggaagttccattcggccctccacaaagacgag
cccaaaaccacggactccttctaccccgccatgcgcctcacggtgccgtcttttgaacga
gagcgaatggcttatggcatcaaagagaacatgctggcgaaactctacatcgacgtgttg
ggcctcccgaagaacggcccggaagcccacaagctgttgaactaccgcgcgccgaccacg
tcccagggagaagccggggacttcgccggcatggcgtatttcgtgctgaagaaacgatgc
agcggccaaggaaacctcagcatcaaggaggtcaacgactttctggactcggtggccatc
aacaacgccagcaagaagaaagacctggtgaagaagagcctgctgcacctcatcacccag
agctcggcgctcgagcagaagtggctcatcaggatgatcctgaaggacatgaagctcggc
gtcagcaaggaaaccgtcctgcaagtcttccacgccgacgctgccgacctctacaacgtc
aacacggacttgaacaaggtgtgccagcagctccacgacccctccgtgtccctgagcgaa
gtctccatcgggctgttctccgccttcaagcccatgttggccggcgtggcgaacatccgc
aacgtggagaagcagatgggcaacagtcctttcttcatcgagaccaagctggacggggag
cgcattcagctgcacaaagacggagacgtgtacaagtacttcagccgaaacgccttcgac
tacacgcagcagttcggagggtcgccgctggagggatcgctgacgccgtacgtccacaac
gtcttcaaaagccacgtggtgaactgcatcctggacggcgagatgatggcgtacaacccg
acggcggacaccttcatgcagaaagggagcaagttcgacatcaagaggctgacggacgac
tccgagttacagacgtgcttctgcgtgttcgacgtgctgatggtcaacgaccggaagctc
ggcaaggagacgctgaggaaacgccacgagacccttcagacggttttcgccccggtcaag
gggaggatacaggtggtgccgaagaccgacgccaggaccgtgcgggaggtggtggacgct
ctcaacgacgccatcgacagcagagaggaagggatcatggtgaaggatcctctgtccgtc
tacaagcccgacaagcggggcgaaggatggctgaagataaagccggagtacgtggacggc
ttgatggacgagctggacctgctgatcgtcggcggctactggggcaaagggaggcgaggc
gggatgatgtcgcacttcctgtgcgcggtcgccgaagctccgaagcccggcgagaaaccg
tcggttttccacaccttctgccgcatcggctccggctacaccatgaaagagctgtacgac
ctcggcttgaagctcgccgagcactggaaggtctaccgcaaaaacgacccgccggcgtcc
ctcctgtgcggaacggagaaacccgaagtctacatcgagccgcgcaactccgtcatcctc
caggtgaaggcgaccgagatcgtcggtagcgacatgtacaaaaccaactgcaccctgcgc
tttccccggatcgagaagatccgcgaggacaaggagtggcaccagtgcacgaccctggcg
gagctggatcagttccgcagcaaggcgtccgggaagctcgcgtcgcggcacctttgcatc
gacgccgacgaaccgcagaagaagaagcgcaagctgccggccaagaacaagaaggcattc
ggcgtcgtcgaccacttcaagccccaggacctgtccggggttaccaaggagacggatatg
tttgaggacgtggagttctgcatcctgaacggcaccgaggatcatcccaagtccgagctg
gagaagggcgttgccaggtgcggcggtatcgtggtccagaacccgggcaaggactcctac
tgcgtgatcgccggcgtggagaacatgcgcgtgaagaacctgatcgccgccaaccagcac
gacgtggtccgggccgcctggctgctggagtgcctggacctgaaggaggtggttccctgg
caaccgcgccacatgatccacatgtcaccctccaccagggagcacttcgccaaggagtac
gacggctacggcgacagctacttcgtggacacggacgagcggcagctgcgggaggtgttc
ggccggatcggcgccgcctcgggcgtggacgccgggcaggtggaggagcgctgcggctgg
gacgacctccccaccagcatgttcagacccttcacggcgtacatggacgccgacgtcgga
gaccccgagagcgccgccgccgcttcctgcctggaaatcagggcgcaggagtttctctac
cacggaggaacggtggcgcagaagttggaggaaggagtctcgcacgtcgtcgtcgccgag
gaaacgagactccgggatttgaggactgtgaggcgccgcttcaggaagaagtttaagatt
gtaagagactcgtgggtgactgattcaatcgaggcagggtatgtgacgaatgacaccgac
tactcggtttga
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integrated database retrieval system
