Eumetopias jubatus (Steller sea lion): 114200305
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Entry
114200305 CDS
T07240
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
eju
Eumetopias jubatus (Steller sea lion)
Brite
KEGG Orthology (KO) [BR:
eju00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
eju03036
]
114200305 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
eju03400
]
114200305 (SMCHD1)
Chromosome and associated proteins [BR:
eju03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
114200305 (SMCHD1)
DNA repair and recombination proteins [BR:
eju03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
114200305 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
DUF3447
Motif
Other DBs
NCBI-GeneID:
114200305
NCBI-ProteinID:
XP_027948151
LinkDB
All DBs
Position
Unknown
AA seq
2025 aa
AA seq
DB search
MAAAGGGGPSVGTGEDGGGDGCRTVYLFDRREKESELGDRVLQVEERSDYARFRASVCQT
LGISPEEKFVITTTSRKEITCDNFDDTVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRRIQIKLLFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHHLILEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGNEKR
TSKEVGPFNNIDIEISMFEKGKAPKIVNLREIEDDMQTLYINTAADSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTSFKGVITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEIKT
VPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSNGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLMDPPFRVGVPFNI
PLEFQDEFGHTSQLGNDIQPVFEASGLSLHYEEITRGPNCVIRGVTAKGPVNSCQGKNFN
LKVILPGLKEDTQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNITTQ
PKLIVHCKFLGAPNLPVYVVDCSSSGTSILTGSAIQVQNIRKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREIHI
TSTLADKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVQMGQELQGEIVVIVTDQYGNQIQAFSPSSLSALGIAGIGLDS
SHLKTTFQENTQSISVKGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWP
ELKESIPVINGRELQNPLIVQLCDQWDNPAPVSQVKISLMKANNLKLTPSNQQHKTDERG
RANLGVFSVYAPRGEHMMQVRAIYNKNIIEGPIIKLMILPDPEKPIRLNVKYDKDASFLA
GGIFTDFMITVISEDDSIIKNINPARISMKMWQLSNSGNRPPANAETFSCNKIKDNDKED
GCFYFRDKAIPNKVGTYCIQFGFMMDKANILNSEQVIVDVLPNQPVKLVPKIQPATPAVS
NVRSVASRTLVKDLHLTITDDYNNHTGVDLVGTVVATIKGSNEEDTDTPLFIGKVRTLEF
PFLKGSAEITNLVLAENSPGRDSTEYFIIFDPQLPALSRTLEPYILPFMFYNDVKKQQQM
AALTKEKDQLSKNIIMYRSLFEASNQLLDEMKCQVEEAKLKEAQLQNELKTHNIDIPTTQ
QMPHIEALLKRKLSEQEELRKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRLEKKPLPHYRNGRL
YFKPIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTL
LTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLVLGEQIDLLQQYRTAVNKL
NSVIEDLNRQLEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPAKVEM
TDCPVPPKRMRREASRQNSLRNSEDSKSLRTSYMASTLELHMANG
NT seq
6078 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcggcgggccctcggtggggaccggagaggacggcggaggcgac
ggctgcaggacggtgtacttgtttgaccggcgcgagaaggagtccgagctcggggaccgg
gtgttgcaggtcgaggagcgctcggactacgcaaggttccgcgcctctgtgtgtcagaca
cttggcatttcacctgaagagaaatttgttattacaacaacaagtaggaaggaaataacc
tgtgataattttgatgacactgttaaagatggagtcactctatacctgctacagtcagtc
aatcagttactactaacagctacaaaagaacgaattgacttcctacctcactatgacaca
ctggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttgccattt
gctcttgcagaattaattgacaattcattgtctgctacgtctagaaacactggtattaga
agaatacagatcaaattgctttttgatgaaacacaaggaaaacctgctgttgcagtgata
gataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtataggttgtca
aaatttacaaggcaaggtgactttgaaagtgatcattcaggatatgttcgtccagtacca
gtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaagcaggctgtt
ttctttgttggacaatcagccagaatgataagtaaacctgcagattcccaagatgttcat
gaacttgtgctttctaaagaagattttgagaagaaggagaaaaataaagaggcaatatat
agtggatatattagaaacagaaagccatctgattctgttcacattacaaatgatgatgaa
agatttctacatcatcttatcttagaggagaaggaaaaagatagctttactgctgtggtt
atcacaggagtacaaccagaacacatacagtatttgaaaaattatttccttctttggaca
agacagttagcgcatatttatcattactatattcatggcccaaaaggaaatgaaaaacgt
acatcaaaagaagttggacctttcaacaacattgatattgaaatttctatgtttgaaaag
gggaaggcacctaagattgtcaacctaagggaaatagaagatgacatgcagacgttgtat
ataaacacagcagctgatagttttgagttcaaggctcatgttgaaggagatggtgtagtg
gaagggattattcgatatcaccctttcttatatgatagagaaacttaccctgatgatcca
tgctttccatcaaaattaaaagatgaagatgatgatgatgattgtttcatacttgagaaa
gcagcaagagggaaaaggcctatttttgaatgtttttggaatggacggctaataccatat
acatctgttgaagactttgactggtgtactcctccaaagaagagagggcttgcaccaatt
gaatgttacaatagaatatctggtgcattattcactaatgacaaattccaggtcagcaca
aataaactgactttcatggatcttgagctaaaattgaaagataagaacaccctttttaca
aggattttaaatggacaggagcagcgaatgaaaatagacagagaatttgccttatggctg
aaggactgtcatgaaaagtatgacaaacaaataaaatttacatcttttaaaggagtaatt
acacgtcctgatcttccttctaaaaagcagggcccctgggcaacatactcagcaatagaa
tgggatgggaaaatatacaaagcaggacagctggtcaagacaatcaagacacttcctctc
ttttatggaagcatagtaaaattttttctttatggtgatcatgatggagaagtatatgcc
acaggaggagaggttcagattgcaatggaacctcaggcgctgtatgatgaaataaaaact
gtgccaattgcaaagcttgataggacagttgctgaaaaagctgtgaaaaaatatgtagaa
gatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagacgaatta
ttgccaaatgaaattaggcctgctggaacccccattggtgcattaagaattgaaatactg
aataaaaaaggagaagcaatgcaaaagcttcctggaacaagtcatggagggtcaaagaaa
ctcctggttgagctcaaagttatattacattcttcaaatggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcag
aagttggggaattatacattgaaattacaagttgtattgaatgaaagtaatgcagacact
tatgcaggaagaccactaccatcaaaggcaattaaattttctgttaaagagggtaaacca
gagaagttttcatttggtcttatggatcctccttttcgtgttggagtcccattcaatatc
cctctggagtttcaggatgaatttggtcataccagtcaactaggaaatgatattcagcca
gtttttgaagcaagtggtttatctttacattatgaagaaataaccagaggaccgaattgt
gtgattcgaggtgttacagctaagggccctgtaaactcttgtcagggcaagaattttaat
ctgaaggttattctgccgggtttaaaagaagacacacagattttaaaaattagattacta
ccaggtccccctcatcgattgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaacagctttcccatttcaggtagaagttttggatgaatcagacaatataacaacacaa
ccaaaattgattgttcattgtaagtttttaggtgctccaaatcttccagtctacgttgta
gattgtagcagttctggaaccagtattttaacaggatctgcaattcaagtacagaacatt
agaaaagaccagactcttaaagcaaaaattgaaatacctagttgtaaagatgtggcaccc
gtggagaagactattaagttgctccctagtagccatgttgcaagattacagatattcagt
gtggaaggacaaaaggcaatccagatcaaacatcaggatgaggttaattggatagcaggc
gatattatgcataatcttatttttcaaatgtatgatgaaggagaaagagaaattcatata
acatcaactttagcagataaaattaaagttaattggactcctgagattaacaaagaacac
ttgctacagggtctgcttcctgatgtacaagtaccaacgtctgtgaaagatatgcgttat
tgccaggtttcattccaagatgatcatgtgtctttggaaagtgcatttacagtaagacca
cttcctgatgaacctaaacatctaaaatgtgagttaaaaggaggaaaaacagtacagatg
ggccaagagctccaaggagaaatagttgtaatagttacagatcagtatggaaatcagatt
caggcattttcaccaagttctttatctgccttgggaattgctgggattggacttgatagc
tctcatttgaaaactacctttcaggaaaatacacaaagtataagtgtaaaaggcatcaag
tttattccaggccctcctggaaataaggatctttgttttacttggcgtgaattttctgac
tttattcgagtgcagctaatttctggaccaccagcaaaacttcttcttatagactggcca
gaattaaaggagtccattccagtgattaatggaagagaactacagaatcctctcattgtt
caactttgtgatcagtgggataatccagcacctgtatcacaggttaagataagtctcatg
aaagctaacaatttaaagctcactccttcaaaccaacagcataaaacagatgaaaggggc
agggctaatttgggagtgttcagtgtttatgcccctagaggagaacatatgatgcaggtt
agagccatctataacaagaatatcatagaaggacctataattaagttaatgattctccca
gaccctgaaaaaccaattcgtctcaatgttaaatatgacaaagatgcttcctttttagca
gggggtattttcactgattttatgattactgttatttctgaagatgacagtatcattaaa
aatattaatccagcacgtatttccatgaaaatgtggcagctgtctaacagtgggaaccga
ccaccagcaaatgcagaaacatttagttgtaataaaataaaagataatgacaaggaagat
ggctgcttctacttcagggataaagcaattcctaacaaagtgggaacatattgtatccag
tttgggtttatgatggataaagcaaatattcttaacagtgaacaggttatagttgatgtt
ctacctaatcaacctgtgaagttagttcctaaaattcagccagctacaccagctgtttca
aatgttcgctcagttgccagtaggaccttggtcaaagatttacatcttactattacggat
gactacaacaatcatactggagttgatttggttggcactgttgtagctaccattaaaggt
tctaatgaggaagatacggatacaccactctttattgggaaagtgagaacactcgaattt
ccctttctgaaaggttcagctgaaattacgaatctagtgctggcagaaaatagtcctgga
agggatagtactgaatattttattatatttgaccctcagctaccagctctgtcaagaacg
ttagaaccatatatcctaccatttatgttttacaatgatgttaagaagcagcaacaaatg
gcagcacttacaaaagaaaaggaccagttatctaagaatattataatgtatagaagttta
tttgaagccagtaatcagcttcttgatgaaatgaagtgccaagtcgaagaagcaaaatta
aaagaggcccagttgcaaaatgaactaaaaacacataatattgacattcctacaacacaa
cagatgccacacattgaagcacttttgaaaagaaagttatcagaacaggaagaactaagg
aaaaaacctagaagatcatgtactcttccaaactatactaaaggcagtggagatgttttg
ggaaagattgcacacctggcacaaattgaagatgatagagctgccatggttatttcttgg
catctggcaagtgacatggactgtgttgtcaccctgaccactgatgctgcacgtcgtatc
tatgatgaaacccaaggtcgtcagcaggtgttgcccctggattctatttataagaagact
cttccagattggaaaaggttagaaaaaaaacctctacctcattaccgaaatggaagattg
tattttaaacccattggagatccagtctttgcccgagatttgttaacatttccagataat
gtagaacattgtgaaacagtatttggtatgctgttaggagacaccattattttggataat
ttggatgctgccaatcattatagaaaagaggttgttaaaattacacactgtcctacactg
ctcaccagagatggagatcgcattcgaagtaacggaaagtttgggggccttcagaataaa
gctcctccaatggataaacttcggggaatggtatttggagctccaataccaaaacagtgc
ctggtcttaggggaacaaatagatcttcttcaacagtatcgtactgctgtgaacaagttg
aacagtgtgatcgaggaccttaaccgtcagttagagtaccttcacactcctgatatgaag
aagaaaaaacaagaacttgatgaacaggagaaaaatctgaaactaattgagcaaaaacta
ggtatgactcccacacgtaagtgtaatgactcattgcgccatccagcaaaggttgaaatg
acagattgtccagttcctcctaaaagaatgagaagggaagcttcaagacaaaatagtctt
agaaattcagaagacagcaaatctctaagaactagttacatggcaagtactctggagcta
cacatggctaacggttaa
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integrated database retrieval system
