Epidermidibacterium keratini: EK0264_16770
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Entry
EK0264_16770 CDS
T06370
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eke
Epidermidibacterium keratini
Pathway
eke03030
DNA replication
eke03410
Base excision repair
eke03420
Nucleotide excision repair
eke03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EK0264_16770 (ligA)
03410 Base excision repair
EK0264_16770 (ligA)
03420 Nucleotide excision repair
EK0264_16770 (ligA)
03430 Mismatch repair
EK0264_16770 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eke03032
]
EK0264_16770 (ligA)
03400 DNA repair and recombination proteins [BR:
eke03400
]
EK0264_16770 (ligA)
Enzymes [BR:
eke01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EK0264_16770 (ligA)
DNA replication proteins [BR:
eke03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EK0264_16770 (ligA)
DNA repair and recombination proteins [BR:
eke03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EK0264_16770 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EK0264_16770 (ligA)
MMR (mismatch excision repair)
DNA ligase
EK0264_16770 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EK0264_16770 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
Nlig-Ia
HHH
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QHC01769
UniProt:
A0A7L4YSK8
LinkDB
All DBs
Position
3498291..3500378
Genome browser
AA seq
695 aa
AA seq
DB search
MAKSTQTDQVDPTKVADRHAELSAELTEHAQRYYDGDPVITDAAYDELYLELVQIEESFP
DLVTDASPTQRVGAQVGSSFAPAEHLQRMYSLDNVFAIDELKAWAERTQRNAGTTLDYLC
ELKIDGLAVALVYEDGVLTRGATRGDGRVGEDITANVKAVANIPDRLTGDDIPALLEVRG
EVFFPVADFTELNEKLAAEGKPTYANPRNTAAGSLRQKDPRETAKRKLRLIVHGIGASRG
VRWRSQSEAYDLLRGWGLPVSEHSKVVSDVDGVVDFVEYYGEHRHDVEHEIDGVVVKVDD
IAMQAELGSTSRAPRWATAFKYPPEEVNTKLLDIRVNVGRTGRVTPYGVMEPVKVAGSTV
ENATLHNAHEVKRKGVLIGDVVVLRKAGDVIPEILGPVVALRDGTEREFVMPTECPECGT
TLREMKEGDADIRCPNSRTCPAQLRERLSYLGSRGGFDIDALGWKAAAALVESPDFTDEG
DLFDLDAQKLAKVAFFRKKDGTPNAAAGVLLESIERAKAQPLWRVLVSLSIRHVGPTAAQ
ALAAHFRDLQVIMDAPIEQLAAVDGVGQIIAESLHEWWQVDWHRAIVDKWRAAGVRMADE
APEASDLEQTLEGLSIVVTGSLDGYTREEAQEAITSRGGKAASSVSKKTAYVVVGDSPGS
KAKKAEELGIPVLDEDAFAALLESGPEEDESDEND
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
gtggctaagagcacccagaccgaccaggtggatccgaccaaagtcgccgaccggcacgcc
gagctgagcgccgagctgaccgagcacgcccagcgctactacgacggcgatccggtgatc
accgatgcggcgtacgacgagctgtacctggagctggtgcagatcgaggagtcgtttccc
gacctcgtcaccgacgcgtccccaacacagcgggtcggcgcgcaggtcggctcgagcttc
gcacctgccgagcatctgcagcggatgtacagcctcgacaacgtcttcgcgatcgacgag
ctgaaggcatgggccgagcgcacgcagcgcaatgccggcaccacgctggactacctgtgt
gagctgaagatcgacggcctggcggtcgcactcgtctacgaagacggcgtactcacgcgc
ggcgccacccgcggcgatggccgggtgggtgaagacatcaccgccaacgtgaaggccgtc
gccaacatcccggaccggttgaccggtgacgacatcccggcgctgctggaagtgcgcggc
gaggtcttctttccggtcgccgacttcactgagctcaacgagaagctcgccgccgagggc
aagccgacctacgccaacccgcgcaacaccgcggccggttcgctgcgccagaaggacccg
cgcgagaccgccaagcgcaagctgcggctcatcgtgcacggcattggcgcctcgcgcggt
gtgcgctggcgcagccagtccgaggcctacgacctgctgcgcggctggggcctgccggtc
agcgagcactcgaaggtcgtctcggatgtcgacggggtggtggactttgtcgagtactac
ggcgagcatcggcacgatgtcgagcacgagatcgacggcgtggtcgtcaaagtcgacgac
atcgcgatgcaggccgagctcgggtcgaccagccgcgcgccgcgctgggcgaccgcgttc
aagtacccgcccgaggaggtcaacaccaagctgctcgacatccgggtcaatgtcggacgc
accgggcgggtcacgccgtacggcgtcatggagccggtcaaggtcgccggctcgaccgtc
gaaaacgcgacgctgcacaacgcgcacgaggtcaagcgcaagggcgtgctgatcggcgac
gtcgtcgtgctgcgcaaggccggcgatgtcatcccggagatcctcggcccggtcgtggcg
ctgcgcgacggcaccgagcgcgagttcgtcatgcccacagagtgtcccgagtgcggtacg
acgctgcgcgagatgaaagagggcgatgccgacatccggtgcccgaactcgcgcacctgc
cccgcacagctacgcgaacgcctgtcatatctgggatctcgcggcggtttcgacatcgac
gcgcttggctggaaggccgctgccgcgctcgtcgagtcgccggacttcaccgacgagggc
gacctctttgacctggatgcgcagaagctggccaaggttgccttcttccgcaagaaggac
ggcacacccaacgccgctgccggcgtactgctggagtcgatcgagcgggccaaggcgcag
ccgctgtggcgggtgctggtctcgctgtcgatccggcacgtggggccgaccgcggcgcag
gcgctggccgcgcatttccgcgacctccaggtgatcatggacgccccgatcgagcagctc
gccgcggtcgacggcgtcgggcagatcatcgccgagtcgctgcacgagtggtggcaggtc
gactggcaccgcgcgatcgtcgacaagtggcgcgctgccggcgtgcggatggccgacgag
gcacccgaggcgagcgatctggagcagacgctggaggggctctccatcgtggtcaccggg
tcgctggacggctacacgcgcgaggaggcgcaggaggcgatcacctcgcgcggtggcaag
gcggcgagctcggtgagcaagaagacggcgtacgtcgtcgtcggcgactcgccgggctcg
aaggccaagaaggccgaggaactcggcatcccggtgctcgacgaggacgcgttcgccgcc
ctgttggagtccggccccgaggaggacgagagcgacgagaacgactag
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